Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F1 I1 R1
|
16 |
55.7 |
3673927 |
94.4% |
3468187 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,940,843 |
T→A |
I148N (ATC→AAC) |
wecF → |
putative enterobacterial common antigen polymerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,940,843 | 0 | T | A | 100.0%
| 167.0
/ NA
| 46 | I148N (ATC→AAC) | wecF | putative enterobacterial common antigen polymerase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (22/24); total (22/24) |
CGTTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGATCTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCTGGTGGT > REL606/3940771‑3940915
|
cGTTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAactt > 1:789348/1‑76 (MQ=255)
cGTTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAactt < 1:596833/76‑1 (MQ=255)
cGTTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGTTTATTGCTGTTCCGTCTTAACTCCTACAGTCAGAactt > 1:1140457/1‑76 (MQ=255)
tGGTAAGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTtctc < 1:603377/76‑1 (MQ=255)
ggTAAGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTcc > 2:647185/1‑76 (MQ=255)
tAAGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAg < 1:1183138/76‑1 (MQ=255)
aaGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGt > 2:327712/1‑76 (MQ=255)
aGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTg < 1:664391/76‑1 (MQ=255)
gCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGa < 1:1328800/76‑1 (MQ=255)
cGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGaa < 2:1653666/76‑1 (MQ=255)
gTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAg < 1:687857/76‑1 (MQ=255)
tCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGt > 2:476617/1‑76 (MQ=255)
cGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGtc > 1:1008937/1‑76 (MQ=255)
gCATCTTCGTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGtctc < 2:562675/76‑1 (MQ=255)
aTCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCg > 1:1295718/1‑76 (MQ=255)
aTCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCg < 1:1138407/76‑1 (MQ=255)
cttcttCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCggc < 2:928327/76‑1 (MQ=255)
tcATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCggcgtggc > 2:142311/1‑76 (MQ=255)
tGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGtt < 2:1008936/76‑1 (MQ=255)
acaACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTaaa > 1:447117/1‑76 (MQ=255)
acaACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTaaa < 1:1432608/76‑1 (MQ=255)
acaACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTaaa < 1:1365997/76‑1 (MQ=255)
acaACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTaaa < 1:1286833/76‑1 (MQ=255)
aaCGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAAc > 1:973013/1‑76 (MQ=255)
aCGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACg > 1:204108/1‑76 (MQ=255)
aCGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACg < 1:360301/76‑1 (MQ=255)
ttttGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCtt < 2:1176647/76‑1 (MQ=255)
tttGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCttt > 2:943467/1‑76 (MQ=255)
ttGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCtttt < 1:1009914/76‑1 (MQ=255)
ttGCTGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCtttt < 1:694276/76‑1 (MQ=255)
tGTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACtt > 1:1234764/1‑76 (MQ=255)
gTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACttt > 2:527544/1‑76 (MQ=255)
gTTCCGTCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACctt > 2:1141325/1‑76 (MQ=255)
tCTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATc > 1:378740/1‑76 (MQ=255)
cTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATcc > 2:619998/1‑76 (MQ=255)
cTTAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATcc > 1:728493/1‑76 (MQ=255)
ttAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTATTTTTTCATccc > 1:1052393/1‑76 (MQ=255)
ttAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATccc < 1:1313632/76‑1 (MQ=255)
tAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCg > 2:1663373/1‑76 (MQ=255)
tAACTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCg > 2:134031/1‑76 (MQ=255)
aaCTCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCgg < 1:966043/76‑1 (MQ=255)
tCCTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTNGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGa < 1:1776691/76‑1 (MQ=255)
ccTACAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGAt > 1:1395348/1‑76 (MQ=255)
aCAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCt < 2:1309352/76‑1 (MQ=255)
aCAGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCt < 1:998306/76‑1 (MQ=255)
aGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCtgg > 1:212242/1‑76 (MQ=255)
aGTCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCtgg > 1:299030/1‑76 (MQ=255)
tCAGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCtggtg > 2:696504/1‑76 (MQ=255)
aGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCTggtggt < 2:555396/76‑1 (MQ=255)
aGAACTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCTggtggt < 1:476618/76‑1 (MQ=255)
|
CGTTGGTAAGCGTCGGCATCTTCTTCATGCACAACGGTTTTTTGCTGTTCCGTCTTAACTCCTACAGTCAGATCTTCTCCAGTGAAGTCTCCGGCGTGGCGTTAAAACGTTTCTTTTACTTTTTCATCCCGGCGATGCTGGTGGT > REL606/3940771‑3940915
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
