Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F1 I1 R1
|
16 |
55.7 |
3673927 |
94.4% |
3468187 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
4,097,191 |
(CAACACT)1→2 |
coding (382/846 nt) |
glpF ← |
glycerol facilitator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4097183 | 1 (0.020) | 47 (0.930)
+TCAACAC |
36/120 |
0.2 |
98.0% |
coding (390/846 nt) |
glpF |
glycerol facilitator |
| ? | REL606 |
4097184 = |
1 (0.020) | coding (389/846 nt) |
glpF |
glycerol facilitator |
TCACCATCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4097110‑4097183
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTAGTAAAGCC > REL606/4097184‑4097256
|||||||
TCANCATCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATC > 1:1635516/1‑76
CACCATCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCA < 1:790822/76‑1
ACCATCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAA < 2:1208019/76‑1
ACCATCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAA > 1:74036/1‑76
ATCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACAC > 1:607203/1‑76
TCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACT < 1:934556/76‑1
TCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACT < 1:1308526/76‑1
TCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCA > 2:1088057/1‑76
ACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAACTAGAGAAAGTGCCAGCCAGATCAACACTCAACA < 1:1679575/76‑1
TGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACT < 1:1381296/76‑1
TGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACT < 2:1271047/76‑1
GCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTT > 2:1344459/1‑76
CGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGGGAAAGTGCCAGCCAGATCAACACTCATCACCTT < 1:1681641/76‑1
CGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTT < 1:810459/76‑1
GAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTC < 2:333584/76‑1
GAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTC > 2:99321/1‑76
AAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACCCATTCA < 1:1734418/76‑1
AAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCA > 1:640872/1‑76
AAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCA > 2:698077/1‑76
AAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCA < 2:926941/76‑1
AAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAA < 1:1111415/76‑1
AGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAAC > 2:1566188/1‑76
AGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAAC > 2:721207/1‑76
TGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTG < 1:965856/76‑1
AATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAA > 1:789617/1‑76
ATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAAC > 2:626828/1‑76
TATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCATCACTTTCAACGCTGCCGCGAACAATGT < 1:1618504/76‑1
TATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGT > 2:1505798/1‑76
GAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGAT > 1:1225385/1‑76
AGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATG > 2:1638997/1‑76
AGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCAAACAATGTGATG < 2:76801/76‑1
GATTAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAG > 1:519893/1‑76
TANGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGNCT < 2:1485949/76‑1
TAGGGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCT < 1:695380/76‑1
GGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGNGTCTGCT < 2:1471671/76‑1
GGTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCT > 1:1375915/1‑76
GTAAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTC > 2:392173/1‑76
AAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGA > 1:781668/1‑76
AAGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGA > 1:522163/1‑76
AGTAGAGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAA > 1:581190/1‑76
TAGTGNAGGTGCCAGCCAGATCAACACTTAACACTTTCAACGCTGCCGCGAACAATGTGATNAGTCTGCTCGAAGT > 2:1833180/1‑76
AGAGAAAGTGCCAGCCAGATCAACACTCAACACTCTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTC < 1:1505799/76‑1
AGAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAGTGTGATGAGNCTGCTCGAAGTCGA < 1:8270/76‑1
GAAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAA < 2:946672/76‑1
AAAGTGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAA > 2:1334096/1‑76
TGCCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATA > 2:1124626/1‑76
CCAGCCAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAA > 1:465391/1‑76
CAGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTA > 1:908995/1‑76
AGATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGGCTGCTCGGAGACGAAAAATAAATTGTAG > 1:405185/1‑76
ATCAACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTAGTA > 2:1268345/1‑76
TCAACACTCAACACTTTAAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGACGAAAAATAAATTGTAGTAA > 1:1820266/1‑76
AACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTAGTAAAG < 2:1246445/76‑1
ACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTAGTAAAGC < 1:825875/76‑1
ACACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTAGTAAAGC > 1:987268/1‑76
CACTCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTAGTAAAGCC < 1:721208/76‑1
|||||||
TCACCATCTCAACTGCGAAAGCCTGCACAAAATTGATATGAGGATTAGGGTAAGTAGAGAAAGTGCCAGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4097110‑4097183
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCAACACTTTCAACGCTGCCGCGAACAATGTGATGAGTCTGCTCGAAGTCGAAAAATAAATTGTAGTAAAGCC > REL606/4097184‑4097256
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
