Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A118 F1 I1 R1
|
15 |
203.6 |
13305188 |
92.8% |
12347214 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,894,998 |
Δ6,935 bp |
IS150‑mediated |
rbsD–[yieO] |
rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3893607–3894996 |
3901932 |
6937–8326 |
85 [77] |
[1] 217 |
[insJ‑5]–[yieO] |
[insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3894997 | NA (NA) | 208 (1.070)
+GT |
106/146 |
0.1 |
99.5% |
intergenic (+27/‑161) |
insK‑5/rbsD |
IS150 putative transposase/predicted cytoplasmic sugar‑binding protein |
| ? | REL606 |
3901933 = |
1 (0.010) | coding (487/1428 nt) |
yieO |
predicted multidrug or homocysteine efflux system |
GATK/CNVnator alignment
N/A
