Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A41 F1 I1 R1
|
21 |
57.1 |
3643130 |
97.0% |
3533836 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,036,374 |
(A)9→8 |
coding (585/1113 nt) |
wbbC ← |
putative glycosyltransferase WbbC |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,036,366 | 0 | A | . | 96.4%
| 256.1
/ 3.5
| 55 | coding (593/1113 nt) | wbbC | putative glycosyltransferase WbbC |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base . (29/24); total (30/25) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 |
CTAATTTTTTGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGAAAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTACAATAA > REL606/2036292‑2036441
|
cTAATTTTTTGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaa > 2:796490/1‑76 (MQ=255)
tAATTTTTTGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaa < 1:1055720/76‑1 (MQ=255)
tAATTTTTTGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaa > 2:1414481/1‑76 (MQ=255)
aaTTTTTTGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaaa > 1:48185/1‑76 (MQ=255)
aaTTTTTTGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaaa > 1:1552793/1‑76 (MQ=255)
ttttttGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaaaan < 1:30568/76‑2 (MQ=255)
ttttGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaaaaaaa < 1:1167162/76‑1 (MQ=255)
tttGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCACNGCACCCACCGAGaaaaaaaag > 2:289823/1‑75 (MQ=255)
ttGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaaaaaaagg > 1:1765982/1‑74 (MQ=255)
tGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaaaaaaaggt > 2:1078439/1‑73 (MQ=255)
tGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGaaaaaaaaggt > 2:1065994/1‑73 (MQ=255)
aCTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTca < 2:1061142/76‑1 (MQ=255)
tttAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTcaca < 2:363743/76‑1 (MQ=255)
tAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAAt > 2:50475/1‑76 (MQ=255)
aGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATc < 1:1315938/76‑1 (MQ=255)
aGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATc > 1:960708/1‑76 (MQ=255)
aaaaGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCat > 2:591243/1‑76 (MQ=255)
aaaaGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCat < 1:118327/76‑1 (MQ=255)
aaaaGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCat > 2:885258/1‑76 (MQ=255)
aaaGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCata > 1:1000464/1‑76 (MQ=255)
tATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑CAAAAAAAGGTTCACAATCATATTGGTGta > 2:318006/1‑76 (MQ=255)
tATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑CAAAAAAAGGTTCACAATCATATTGGTGta > 2:317997/1‑76 (MQ=255)
tATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGta > 2:729847/1‑76 (MQ=255)
atcatcAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGtat < 2:1681429/76‑1 (MQ=255)
tcatcaAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGtata > 2:1277825/1‑76 (MQ=255)
tcatcaAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGtata < 1:643449/76‑1 (MQ=255)
tcatcaAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGtata < 1:643454/76‑1 (MQ=255)
catcaAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATag < 1:474803/76‑1 (MQ=255)
catcaAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATag < 2:220189/76‑1 (MQ=255)
catcaAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATag < 2:1557318/76‑1 (MQ=255)
atcaAATTGGTTTGGTTTTTTTCATTGAAAGGCCCCCCCGGAAAAAAAAAAGGTTCACAATCATATTGGTGTATag < 2:220173/76‑1 (MQ=255)
tcaAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATagag < 2:1719230/76‑1 (MQ=255)
caAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAgg > 1:482727/1‑76 (MQ=255)
aTCGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAtt < 2:863514/76‑1 (MQ=255)
cGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCGCAATCATATTGGTGTATAGAGGAtttt > 1:1247036/1‑76 (MQ=255)
cGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCGCAATCATATTGGTGTATAGAGGAtttt > 1:1247047/1‑76 (MQ=255)
cGTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAtttt < 2:389613/76‑1 (MQ=255)
gTATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAttttt < 2:1773854/76‑1 (MQ=255)
tATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAtttttt > 1:623861/1‑76 (MQ=255)
tATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAtttttt < 1:487538/76‑1 (MQ=255)
tATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAtttttt < 1:308050/76‑1 (MQ=255)
tATTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGAtttttt > 1:1188595/1‑76 (MQ=255)
aTTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTa > 1:670320/1‑76 (MQ=255)
aTTGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTa > 1:249903/1‑76 (MQ=255)
ttGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTaa < 2:28749/76‑1 (MQ=255)
ttGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTaa > 2:436790/1‑76 (MQ=255)
ttGTTTATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTaa > 2:1523864/1‑76 (MQ=255)
ttATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATc > 2:412999/1‑76 (MQ=255)
ttATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATc < 1:1432517/76‑1 (MQ=255)
tATCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCa < 2:821325/76‑1 (MQ=255)
aTCTTCATGCAAAGCACCCACCGAGAAAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCa > 2:1441883/1‑76 (MQ=255)
tCTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCAcc > 1:1469931/1‑76 (MQ=255)
cTTCATGCAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCt < 1:973958/76‑1 (MQ=255)
cAAAGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGTTGTATAGAGGATTTTTTAAAATCACCTAatatat < 1:372661/76‑1 (MQ=255)
aaaGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATAtt > 2:1378799/1‑76 (MQ=255)
aaaGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATAtt > 2:912091/1‑76 (MQ=255)
aaaGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATAtt < 1:1065098/76‑1 (MQ=255)
aaGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTg > 2:947634/1‑76 (MQ=255)
aaGCACCCACCGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTg < 2:147566/76‑1 (MQ=255)
cacccaccGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTaa < 2:1056455/76‑1 (MQ=255)
acccaccGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAg > 1:1745719/1‑76 (MQ=255)
caccGAGAAAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGtt < 2:1575419/76‑1 (MQ=255)
caccGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTa > 2:1806106/1‑76 (MQ=255)
caccGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTa > 2:1726930/1‑76 (MQ=255)
caccGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTa > 2:117380/1‑76 (MQ=255)
accGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTAc > 2:1278535/1‑76 (MQ=255)
ccGAG‑AAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTACa > 1:1574900/1‑76 (MQ=255)
aaaaaaaaaGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTACAATaa > 1:114537/1‑76 (MQ=255)
|
CTAATTTTTTGAACTTTAGAAAAGCCTTTATCATCAAATCGTATTGTTTATCTTCATGCAAAGCACCCACCGAGAAAAAAAAAGGTTCACAATCATATTGGTGTATAGAGGATTTTTTAAAATCACCTAATATATTGTAAGTTACAATAA > REL606/2036292‑2036441
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
