Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A41 F1 I1 R1
|
21 |
57.1 |
3643130 |
97.0% |
3533836 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,775,881 |
+T |
intergenic (‑51/+198) |
insJ‑3 ← / ← cysH |
IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,775,879 | 1 | . | T | 100.0%
| 232.6
/ NA
| 59 | intergenic (‑49/+200) | insJ‑3/cysH | IS150 hypothetical protein/phosphoadenosine phosphosulfate reductase |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (32/27); total (32/27) |
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑TTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCA > REL606/2775805‑2775949
|
tCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑t > 1:926192/1‑76 (MQ=32)
tCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑t > 2:503250/1‑76 (MQ=32)
aaaaGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑ttt < 1:1082774/76‑2 (MQ=21)
aaaaGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑ttt < 2:1055168/76‑2 (MQ=21)
aaaaGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑ttt > 2:683454/1‑75 (MQ=21)
aaGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑tttga > 2:1064787/1‑73 (MQ=21)
gTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGa > 1:1617889/1‑76 (MQ=255)
tttGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAata < 1:510039/76‑1 (MQ=255)
ttGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAatat > 1:60288/1‑76 (MQ=255)
ttGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAatat > 1:797804/1‑76 (MQ=255)
tGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATc < 2:748066/76‑1 (MQ=255)
tGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATc < 2:1540289/76‑1 (MQ=255)
tGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATc < 2:1608601/76‑1 (MQ=255)
tGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATc < 2:682746/76‑1 (MQ=255)
ggCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCg < 1:1324456/76‑1 (MQ=255)
ggCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCg > 1:561222/1‑76 (MQ=255)
gCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGc > 1:1121769/1‑76 (MQ=255)
tttGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCt > 1:676695/1‑76 (MQ=255)
tttGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCt > 1:128491/1‑76 (MQ=255)
tGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTgg > 1:601507/1‑76 (MQ=255)
gACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTggg > 1:593497/1‑76 (MQ=255)
atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCt > 1:964409/1‑76 (MQ=255)
atatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCt > 1:81464/1‑76 (MQ=255)
tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCtt > 1:1049718/1‑76 (MQ=255)
tatTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCtt < 2:184731/76‑1 (MQ=255)
ttAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCtttt > 1:254766/1‑76 (MQ=255)
tAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATGGAAATATCGCCTGGGGCTTTTg < 2:969631/76‑1 (MQ=18)
ggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCa > 1:1262886/1‑76 (MQ=255)
ggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCa < 2:1372700/76‑1 (MQ=255)
ggCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGGCCa < 2:615729/76‑1 (MQ=21)
gCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCAt > 1:435998/1‑76 (MQ=255)
cTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATc > 1:725878/1‑76 (MQ=255)
tATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCt > 1:1389739/1‑76 (MQ=255)
tATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCt > 1:985298/1‑76 (MQ=255)
tATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCt > 1:1239135/1‑76 (MQ=255)
tATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCt < 1:1486233/76‑1 (MQ=255)
aTTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTg > 1:1728612/1‑76 (MQ=255)
aTTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTg < 1:1233095/76‑1 (MQ=255)
ttCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTgg < 2:486870/76‑1 (MQ=255)
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGaa < 1:1396440/76‑1 (MQ=255)
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGaa < 1:1354388/76‑1 (MQ=255)
ccATTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGaa < 1:852277/76‑1 (MQ=255)
aTTTCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAAcc > 1:899441/1‑76 (MQ=255)
tttCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCt < 2:1173381/76‑1 (MQ=255)
ttCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTc < 1:1489012/76‑1 (MQ=255)
ttCATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTc < 1:1343416/76‑1 (MQ=255)
cATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTcgc > 2:557129/1‑76 (MQ=255)
cATCGTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTcgc > 2:537892/1‑76 (MQ=255)
gTCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAAt > 1:16525/1‑76 (MQ=255)
tCCAACAAAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATg < 2:319203/76‑1 (MQ=255)
acaaAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTa > 1:1388083/1‑76 (MQ=255)
caaAATGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTaa > 1:279107/1‑76 (MQ=255)
aaaaTGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAAc < 2:1374920/76‑1 (MQ=255)
aaaaTGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAAc > 1:603969/1‑76 (MQ=255)
aaTGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGc > 2:11482/1‑76 (MQ=255)
aTGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGcc > 2:56989/1‑76 (MQ=255)
aTGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGcc > 1:1191952/1‑76 (MQ=255)
tGGGTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCa < 1:1501172/76‑1 (MQ=255)
gggTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAg < 1:382428/76‑1 (MQ=255)
ggTGCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGa < 1:1178571/76‑1 (MQ=255)
gCAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAg < 2:228749/76‑1 (MQ=255)
cAGTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGc < 1:1640726/76‑1 (MQ=255)
gTACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCt > 1:770037/1‑76 (MQ=255)
tACAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTc < 2:632109/76‑1 (MQ=255)
aCAGGTTTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCa > 1:1403032/1‑76 (MQ=255)
|
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGG‑TTGATAGAAATATCGCCTGGGGCTTTTGTCCATCTGGAACCTCGCGAATGCTTAACGCCAGACAGCCTCA > REL606/2775805‑2775949
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
