Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A41 F1 I1 R1
|
21 |
57.1 |
3643130 |
97.0% |
3533836 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,165,612 |
A→C |
T218P (ACC→CCC) |
rpoC → |
DNA‑directed RNA polymerase subunit beta' |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,165,612 | 0 | A | C | 100.0%
| 274.7
/ NA
| 64 | T218P (ACC→CCC) | rpoC | DNA‑directed RNA polymerase subunit beta' |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (31/33); total (31/33) |
TCTGGAGCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGACCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTT > REL606/4165539‑4165683
|
tCTGGAGCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGccc < 1:975701/76‑1 (MQ=255)
tGGAGCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCaa < 1:779363/76‑1 (MQ=255)
ggAGCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAg < 2:1687525/76‑1 (MQ=255)
gCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGt > 2:1240711/1‑76 (MQ=255)
gCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGt > 2:363241/1‑76 (MQ=255)
gCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGt < 1:44568/76‑1 (MQ=255)
gCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGt > 2:535204/1‑76 (MQ=255)
cAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTa > 1:159964/1‑76 (MQ=255)
cAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTa < 1:359989/76‑1 (MQ=255)
cAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTa > 2:1556721/1‑76 (MQ=255)
cAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTa > 1:772153/1‑76 (MQ=255)
aaGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTAt > 2:440397/1‑76 (MQ=255)
agagTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATc > 2:1052063/1‑76 (MQ=255)
agTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCaa > 2:570344/1‑76 (MQ=255)
agTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCaa < 1:909499/76‑1 (MQ=255)
agTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCaa < 2:197212/76‑1 (MQ=255)
tGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAAc < 1:1581085/76‑1 (MQ=255)
gCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACt < 2:941742/76‑1 (MQ=255)
cGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTg < 1:682351/76‑1 (MQ=255)
cGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTg > 2:170259/1‑76 (MQ=255)
gAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGt > 1:995511/1‑76 (MQ=255)
aaCAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGtt > 2:621331/1‑76 (MQ=255)
aCAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTg < 2:828543/76‑1 (MQ=255)
gTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGaa < 1:766947/76‑1 (MQ=255)
gTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGaa < 2:122478/76‑1 (MQ=255)
ttGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAg < 2:1004259/76‑1 (MQ=255)
tGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGc > 1:71766/1‑76 (MQ=255)
gTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGcgtt < 2:928271/76‑1 (MQ=255)
gAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGcgttcg > 2:397897/1‑76 (MQ=255)
gAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGcgttcg > 2:1041889/1‑76 (MQ=255)
agCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCa < 2:1548860/76‑1 (MQ=255)
gAACGAAACCAACGCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCt < 2:31204/76‑1 (MQ=255)
cGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGt < 1:1515480/76‑1 (MQ=255)
gAAACCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTa > 1:250046/1‑76 (MQ=255)
aaaCCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTaa > 2:957022/1‑76 (MQ=255)
aaaCCAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTaa < 1:1588609/76‑1 (MQ=255)
cAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACaaa > 2:1493221/1‑76 (MQ=255)
cAACTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACaaa > 2:1398976/1‑76 (MQ=255)
aaCTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAAc < 2:545700/76‑1 (MQ=255)
aCTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAAcc < 2:1427666/76‑1 (MQ=255)
aCTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAAcc < 2:1024575/76‑1 (MQ=255)
aCTCCGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAAcc < 1:907247/76‑1 (MQ=255)
ccGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCaga > 2:944282/1‑76 (MQ=255)
ccGAAACCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCaga > 2:602449/1‑76 (MQ=255)
aaaCCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTg > 1:1435567/1‑76 (MQ=255)
aaaCCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTg > 2:569882/1‑76 (MQ=255)
aaaCCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTg > 2:1000763/1‑76 (MQ=255)
aaCCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTgg < 2:369185/76‑1 (MQ=255)
aaCCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTgg > 2:15514/1‑76 (MQ=255)
aaCCAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTgg < 2:167639/76‑1 (MQ=255)
ccAAGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGgat < 1:192790/76‑1 (MQ=255)
atcGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGgatgat < 2:627123/74‑1 (MQ=255)
aGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGgatgat < 2:1210636/76‑1 (MQ=255)
aGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGgatgat > 1:1542757/1‑76 (MQ=255)
aGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGgatgat < 1:505979/76‑1 (MQ=255)
aGCGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGgatgat < 1:1716717/76‑1 (MQ=255)
cGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATcc > 1:1034644/1‑76 (MQ=255)
cGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATcc > 2:1694352/1‑76 (MQ=255)
cGTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATcc > 1:551340/1‑76 (MQ=255)
gTAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCt < 2:515252/76‑1 (MQ=255)
tAAAAAGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTg < 1:413463/76‑1 (MQ=255)
tAAAAAACTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTg < 2:1609355/76‑1 (MQ=255)
aaaaaGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGa > 2:1122020/1‑76 (MQ=255)
aaaGCTGCCCAAGCTTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGAcc > 1:1543849/1‑76 (MQ=255)
aaGCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCg < 1:747268/76‑1 (MQ=255)
gCTGCCCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGtt < 2:151540/76‑1 (MQ=255)
|
TCTGGAGCAAGAGTGCGAACAGTTGCGTGAAGAGCTGAACGAAACCAACTCCGAAACCAAGCGTAAAAAGCTGACCAAGCGTATCAAACTGTTGGAAGCGTTCGTTCAGTCTGGTAACAAACCAGAGTGGATGATCCTGACCGTT > REL606/4165539‑4165683
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
