Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A134 F1 I1 R1
|
15 |
220.5 |
13917488 |
95.6% |
13305118 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,202,309 |
A→G |
I84T (ATC→ACC) |
iclR ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,202,309 | 0 | A | G | 99.5%
| 902.4
/ ‑5.1
| 216 | I84T (ATC→ACC) | iclR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base G (110/104); total (110/106) |
| Fisher's exact test for biased strand distribution p-value = 4.88e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
Only 100 of 221 total aligned reads displayed.
GATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTGGG > REL606/4202236‑4202381
|
gATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGtt < 2:799788/76‑1 (MQ=255)
gATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGtt < 2:2437539/76‑1 (MQ=255)
gATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGtt < 2:6132492/76‑1 (MQ=255)
aTAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTg > 1:1207430/1‑76 (MQ=255)
aTAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTg < 2:735892/76‑1 (MQ=255)
aTAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTg < 1:4188209/76‑1 (MQ=255)
tAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGc > 1:4446810/1‑76 (MQ=255)
tAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGc > 1:3548877/1‑76 (MQ=255)
aGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGcc > 1:6943029/1‑76 (MQ=255)
aGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGcc < 1:5319279/76‑1 (MQ=255)
aGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGcc > 1:1855083/1‑76 (MQ=255)
aGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGcc > 2:2901820/1‑76 (MQ=255)
ggTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCa < 1:4290310/76‑1 (MQ=255)
ggTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCa < 2:517173/76‑1 (MQ=255)
ggTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGGTGCCCa > 1:5920084/1‑76 (MQ=255)
gTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCaa > 2:6679472/1‑76 (MQ=255)
tGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAAt < 2:3975706/76‑1 (MQ=255)
tGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAAt < 2:127230/76‑1 (MQ=255)
tGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAAt > 1:1649129/1‑76 (MQ=255)
tGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAAt < 2:3488729/76‑1 (MQ=255)
aaCAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGt < 2:4868964/76‑1 (MQ=255)
cAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTcc > 2:1062402/1‑76 (MQ=255)
cAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTcc > 1:3438313/1‑76 (MQ=255)
aTCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCa > 1:6878785/1‑76 (MQ=255)
aTCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCa < 2:2967067/76‑1 (MQ=255)
tCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAg > 1:2746312/1‑76 (MQ=255)
tCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAg < 1:132544/76‑1 (MQ=255)
cGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAgc < 1:500794/76‑2 (MQ=255)
cGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGt < 2:1977217/76‑1 (MQ=255)
gCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGtt < 1:3236587/76‑1 (MQ=255)
gCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGtt < 2:1126992/76‑1 (MQ=255)
cTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTc > 1:3793943/1‑76 (MQ=255)
cTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTc > 2:6736692/1‑76 (MQ=255)
tAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCg < 2:1793295/76‑1 (MQ=255)
tAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCg > 1:105461/1‑76 (MQ=255)
tAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCg < 2:3196449/76‑1 (MQ=255)
aCAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGcc < 1:1124112/76‑1 (MQ=255)
cAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCg < 2:91484/76‑1 (MQ=255)
cAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCg > 1:3891666/1‑76 (MQ=255)
aaaTTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGa < 2:2971460/76‑1 (MQ=255)
aTTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGAcc > 1:2554528/1‑76 (MQ=255)
aTTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGAcc < 2:2765784/76‑1 (MQ=255)
aTTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGAcc > 1:4395262/1‑76 (MQ=255)
aTTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGAcc > 1:4650229/1‑76 (MQ=255)
ttACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCt < 1:5793430/76‑1 (MQ=255)
ttACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCt < 2:5102180/76‑1 (MQ=255)
tACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTg < 2:5859659/76‑1 (MQ=255)
tACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTg < 2:4683997/76‑1 (MQ=255)
tACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTg < 2:4376716/76‑1 (MQ=255)
tACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTg < 2:4314665/76‑1 (MQ=255)
tACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTg > 2:413737/1‑76 (MQ=255)
tACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTg > 2:1546381/1‑76 (MQ=255)
ggCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACg > 2:3424352/1‑76 (MQ=255)
ggCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACg > 1:2192451/1‑76 (MQ=255)
gcctctGGAGAAATCTGCTGCCGACCATAAAGGCGTGTGCGCCGTTTGCCCAATGTCCCAGTTCGCCGACCTGACg < 1:1643384/74‑1 (MQ=255)
ctctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCa < 2:6584349/76‑1 (MQ=255)
tctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCAc > 1:1476853/1‑76 (MQ=255)
tctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCAc > 1:6391919/1‑76 (MQ=255)
tctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCAc > 2:3808618/1‑76 (MQ=255)
ctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACg < 1:1010609/76‑1 (MQ=255)
ctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACg < 1:4103226/76‑1 (MQ=255)
ctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACg < 2:6005586/76‑1 (MQ=255)
ctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACg > 2:4790506/1‑76 (MQ=255)
ctGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACg < 1:5820699/76‑1 (MQ=255)
ggAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGaa < 1:887265/76‑1 (MQ=255)
agaAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAAc > 2:6420876/1‑76 (MQ=255)
aaaGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAAccc > 1:4743560/1‑76 (MQ=255)
aaaGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCAGACCTGACGCCCTAAAccc > 2:530756/1‑76 (MQ=255)
aaGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCct < 2:703319/76‑1 (MQ=255)
aaGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACAAAACCct < 1:1906556/76‑1 (MQ=255)
aaGCTCCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCct < 2:4393154/76‑1 (MQ=255)
aGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCctg < 2:2452366/76‑1 (MQ=255)
aGCTGCTGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCctg < 1:778010/76‑1 (MQ=255)
gctgctGCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCctgc > 1:2332655/1‑76 (MQ=255)
ctgctgCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCctgct > 2:5117696/1‑76 (MQ=255)
ctgctgCCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCctgct > 1:6623059/1‑76 (MQ=255)
gctgcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGt > 2:6171635/1‑76 (MQ=255)
gctgcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGt < 2:5060360/76‑1 (MQ=255)
ctgcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGtt > 2:5918862/1‑76 (MQ=255)
ctgcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGtt < 1:3991736/76‑1 (MQ=255)
tgcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTg < 2:2152118/76‑1 (MQ=255)
ggcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTg < 1:3489241/75‑1 (MQ=255)
gcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGc > 2:2552050/1‑76 (MQ=255)
gcCGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGc > 2:3277446/1‑76 (MQ=255)
ccGACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCa < 2:6289095/76‑1 (MQ=255)
gACCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCAtt > 1:5381597/1‑76 (MQ=255)
aCCATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATtg < 2:2885491/76‑1 (MQ=255)
ccATAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATtgt > 1:5128357/1‑76 (MQ=255)
aTAAAGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTgg < 1:5637258/76‑1 (MQ=255)
aaaGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGtt > 1:6754011/1‑76 (MQ=255)
aaGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTa > 2:1621191/1‑76 (MQ=255)
aagCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAg < 2:2282324/74‑1 (MQ=255)
aGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAg < 1:2358018/76‑1 (MQ=255)
aGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAg < 1:3966954/76‑1 (MQ=255)
aGGCATGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAg < 1:4883663/76‑1 (MQ=255)
aTGTGCGCGGGTTGCCCAATGTCCCAGTAAGCTGGCCTGGCGCGCGAAACCCTGCTGTTGCATTGTGGTTAGCAgg < 1:338267/76‑1 (MQ=255)
aTGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAgg > 2:4595193/1‑76 (MQ=255)
aTGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAgg > 1:6254519/1‑76 (MQ=255)
aTGTGCGCCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAgg > 2:2133569/1‑76 (MQ=255)
gcCGGTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTgg > 2:1143924/1‑76 (MQ=255)
|
GATAGGGTGAACAATCGCTAACAAATTACGGCTCTGGAGAAAGCTGCTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTGGG > REL606/4202236‑4202381
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
