Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A67 F1 I1 R1
|
17 |
65.0 |
4212288 |
95.3% |
4014310 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,202,355 |
G→A |
Q69* (CAG→TAG) |
iclR ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,202,355 | 0 | G | A | 100.0%
| 177.3
/ NA
| 46 | Q69* (CAG→TAG) | iclR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (23/23); total (23/23) |
CTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAG > REL606/4202282‑4202424
|
ctgcCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTAtt > 2:1697417/1‑76 (MQ=255)
ctgcCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTAtt > 1:1818170/1‑76 (MQ=255)
tgcCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTg < 1:2096125/76‑1 (MQ=255)
gcCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGc > 1:1003754/1‑76 (MQ=255)
ccGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCa < 1:1813012/76‑1 (MQ=255)
gACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCAtt > 1:1156975/1‑76 (MQ=255)
gACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCAtt > 2:197360/1‑76 (MQ=255)
aCCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATtg > 1:1413927/1‑76 (MQ=255)
ccATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATtgt < 1:597992/76‑1 (MQ=255)
aGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAg < 1:1021860/76‑1 (MQ=255)
ggCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGc < 1:1570627/76‑1 (MQ=255)
ggCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGc < 2:2069356/76‑1 (MQ=255)
ggCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGc > 1:1532718/1‑76 (MQ=255)
cATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAg > 1:1417992/1‑76 (MQ=255)
aTGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAgg < 2:406779/76‑1 (MQ=255)
aTGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAgg > 1:1419905/1‑76 (MQ=255)
aTGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAgg < 2:1296499/76‑1 (MQ=255)
aTGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAgg < 1:866161/76‑1 (MQ=255)
aTGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAgg < 1:501184/76‑1 (MQ=255)
tgCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCgg > 1:857011/1‑76 (MQ=255)
tgCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCgg < 2:1573020/76‑1 (MQ=255)
cgcCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTg < 1:605258/76‑1 (MQ=255)
cggttGCCCAATGGCCCGGGTCGCCGGCCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGt < 2:329424/73‑1 (MQ=255)
aTTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCg < 1:2077661/76‑1 (MQ=255)
ttGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGt > 1:54775/1‑76 (MQ=255)
tGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTg < 1:1805202/76‑1 (MQ=255)
gCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTgg > 1:562125/1‑76 (MQ=255)
gCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTgg < 2:991884/76‑1 (MQ=255)
cAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAAt < 2:1556586/76‑1 (MQ=255)
tGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTgg > 1:1354394/1‑76 (MQ=255)
tGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTgg > 1:1594902/1‑76 (MQ=255)
cccAGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTa > 2:9785/1‑76 (MQ=255)
aGTTCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAAcc > 1:1293288/1‑76 (MQ=255)
tCGCCGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGGGGGTCGTGGAATTGGGTAACCCgg > 2:1005449/1‑76 (MQ=255)
cGACCTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCttg > 2:369677/1‑76 (MQ=255)
gccTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCttgtt < 2:452157/75‑1 (MQ=255)
ccTGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCttgttg > 1:1661794/1‑76 (MQ=255)
tGACGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTgcg < 2:1155953/76‑1 (MQ=255)
gcGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGcc < 1:1818831/75‑1 (MQ=255)
cGCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCa < 1:834450/76‑1 (MQ=255)
gCACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAg < 2:1949526/76‑1 (MQ=255)
cACGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGt > 2:1261065/1‑76 (MQ=255)
aCGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGtt > 2:62350/1‑76 (MQ=255)
aCGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGtt > 1:1157436/1‑76 (MQ=255)
cGAAACCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTc > 1:1587231/1‑76 (MQ=255)
aaaCCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCg > 1:51179/1‑76 (MQ=255)
aCCCTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTg < 1:988027/76‑1 (MQ=255)
ccTGCTATTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAg > 2:1319805/1‑76 (MQ=255)
|
CTGCCGACCATAAAGGCATGTGCGCCGATTGCCCAATGTCCCAGTTCGCCGACCTGACGCACGAAACCCTGCTGTTGCATTGTGGTTAGCAGGCGGTGGGTCGTGGAATTGGGTAACCCGGCTTGTTGCGCCAGTTCCGTGAG > REL606/4202282‑4202424
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
