breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	1,290,641	C→A	C202* (TGC→TGA)	hnr →	response regulator of RpoS
RA	1,306,133	G→T	S36Y (TCC→TAC)	cls ←	cardiolipin synthetase
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
JC	2,103,918	(CCAG)7→9	coding (185/216 nt)	ECB_01992 →	hypothetical protein
RA	2,175,232	(T)6→7	coding (877/933 nt)	pbpG ←	D‑alanyl‑D‑alanine endopeptidase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	3,489,219	G→A	intergenic (‑13/+4)	glpR ← / ← glpG	DNA‑binding transcriptional repressor/predicted intramembrane serine protease
RA	3,497,945	T→G	K31Q (AAG→CAG)	glgP ←	glycogen phosphorylase
RA	3,570,276	T→C	D45G (GAT→GGT)	yhiO ←	universal stress protein UspB
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	3,928,841	A→T	I209F (ATC→TTC)	rho →	transcription termination factor Rho
RA	4,163,728	A→G	K958R (AAA→AGA)	rpoB →	DNA‑directed RNA polymerase subunit beta
RA	4,202,355	G→A	Q69* (CAG→TAG)	iclR ←	DNA‑binding transcriptional repressor
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	761770–761800	762186–762152	353–417	23 [22]	[22] 23	[lysW]–[lysZ]	[lysW],valZ,lysY,[lysZ]