Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A44 F1 I1 R1
|
19 |
54.5 |
3474856 |
97.7% |
3394934 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,232,667 |
T→G |
I236L (ATC→CTC) |
yraQ ← |
predicted permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,232,667 | 0 | T | G | 100.0%
| 199.8
/ NA
| 49 | I236L (ATC→CTC) | yraQ | predicted permease |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (27/22); total (27/22) |
TGTTATCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGATGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAACCGCTCTGTG > REL606/3232595‑3232738
|
tGTTATCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTa < 2:593490/76‑1 (MQ=255)
tGTTATCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTa < 2:916379/76‑1 (MQ=255)
gTTATCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTaa < 1:371899/76‑1 (MQ=255)
tATCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAAc > 1:349361/1‑76 (MQ=255)
tATCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAAc > 1:695339/1‑76 (MQ=255)
aTCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAAcc < 2:352663/76‑1 (MQ=255)
tCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCg < 1:1454693/76‑1 (MQ=255)
aCAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGCAAACCGGGa > 2:813426/1‑76 (MQ=255)
aGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATc > 1:1521879/1‑76 (MQ=255)
aGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATc > 1:1430716/1‑76 (MQ=255)
aGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGCAAACCGGGATc > 1:1093571/1‑76 (MQ=255)
gccccATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCg < 1:32553/73‑1 (MQ=255)
gCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCg > 1:1403014/1‑76 (MQ=255)
aCCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTa > 2:124715/1‑76 (MQ=255)
ccATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTAc > 2:1577330/1‑76 (MQ=255)
ccATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTAc > 2:1184159/1‑76 (MQ=255)
ccATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTAc > 2:1114757/1‑76 (MQ=255)
cATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGGAAACCGGGATCGTACt > 2:1104619/1‑76 (MQ=255)
aTCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTc < 2:734521/76‑1 (MQ=255)
tCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTcc > 1:422021/1‑76 (MQ=255)
gCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGa > 2:1491046/1‑76 (MQ=255)
gCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGa < 1:1716440/76‑1 (MQ=255)
cATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGaa > 1:757007/1‑76 (MQ=255)
aTGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGaaa > 1:678959/1‑76 (MQ=255)
aTGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGaaa > 1:1352504/1‑76 (MQ=255)
aTGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGaaa > 1:1234147/1‑76 (MQ=255)
aTGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGaaa < 1:1178619/76‑1 (MQ=255)
gggggAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAg > 1:295532/1‑76 (MQ=255)
ggggAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGc > 2:1638095/1‑76 (MQ=255)
gggAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCg < 1:567931/76‑1 (MQ=255)
aaTAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTcc < 2:400031/76‑1 (MQ=255)
aTAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCa < 2:1098924/76‑1 (MQ=255)
tAACCAGACTCGTGCGGCACCCACCCCCAGTACTGCCAGGAGGTAAACCGGGATCGTACTCCAGACCAGCGTctct > 2:1270661/1‑73 (MQ=255)
tAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCAt < 1:1460280/76‑1 (MQ=255)
aaCCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATa < 1:1147299/76‑1 (MQ=255)
aCCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAg < 1:124715/76‑1 (MQ=255)
ccAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAgc > 2:1034898/1‑76 (MQ=255)
ccAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAgc < 2:1310241/76‑1 (MQ=255)
gcgTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTg < 2:1553250/76‑1 (MQ=255)
gTGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGcc > 1:87840/1‑76 (MQ=255)
tGCGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGccc > 1:68636/1‑76 (MQ=255)
cGGCACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCa > 1:369360/1‑76 (MQ=255)
cACCCAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCg > 1:297858/1‑76 (MQ=255)
ccAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCt > 1:830533/1‑76 (MQ=255)
ccAACACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCt < 1:1268108/76‑1 (MQ=255)
aaCACCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTaa < 2:1294170/76‑1 (MQ=255)
cacCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTaaaa < 1:649977/76‑1 (MQ=255)
acCAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTaaaaa > 1:21517/1‑76 (MQ=255)
ccAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTaaaaaa < 1:1479863/76‑1 (MQ=255)
ccAGTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTaaaaaa < 1:1479850/76‑1 (MQ=255)
gTACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAAcc < 1:517224/76‑1 (MQ=255)
tACTGCAAGGAGGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAACCg > 2:1409142/1‑76 (MQ=255)
aggaggTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAACCGCTCtgtg > 2:140939/1‑76 (MQ=255)
aggaggTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAACCGCTCtgtg < 2:226080/76‑1 (MQ=255)
aggaggTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAACCGCTCtgtg > 2:992462/1‑76 (MQ=255)
|
TGTTATCGACAGCACCATCGGCATGGGGGAATAACCAGACGCGTGCGGCACCCAACACCAGTACTGCAAGGATGTAAACCGGGATCGTACTCCAGAAAAGCGTCCATAGCGCCCTGCCCCAGCGGCTAAAAAAACCGCTCTGTG > REL606/3232595‑3232738
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
