Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A44 F1 I1 R1
|
19 |
54.5 |
3474856 |
97.7% |
3394934 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,347,125 |
C→T |
intergenic (‑77/‑260) |
aspA ← / → fxsA |
aspartate ammonia‑lyase/inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,347,125 | 0 | C | T | 100.0%
| 246.7
/ NA
| 60 | intergenic (‑77/‑260) | aspA/fxsA | aspartate ammonia‑lyase/inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (31/29); total (31/29) |
AACCTTCTTTTTCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACCGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTACCGTAAT > REL606/4347052‑4347191
|
aaCCTTCTTTTTCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTcgactga > 1:991613/1‑76 (MQ=255)
cttcttTTTCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACtgacga > 2:799378/1‑76 (MQ=255)
tcttTTTCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGAtt < 2:137611/76‑1 (MQ=255)
tttttCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTAt < 1:1470256/76‑1 (MQ=255)
tttttCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTAt < 2:354574/76‑1 (MQ=255)
ttttCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATc > 1:1470711/1‑76 (MQ=255)
ttCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATccc > 1:210745/1‑76 (MQ=255)
cAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCt < 1:1356093/76‑1 (MQ=255)
aaGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTg < 1:96844/76‑1 (MQ=255)
gCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCa < 1:120898/76‑1 (MQ=255)
cTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCAt < 1:231649/76‑1 (MQ=255)
tGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATc < 1:445266/76‑1 (MQ=255)
gCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCg > 1:361314/1‑76 (MQ=255)
gCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCg > 1:621899/1‑76 (MQ=255)
ccAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGa > 2:1359011/1‑76 (MQ=255)
aaTGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGAcc > 2:581765/1‑76 (MQ=255)
aTGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCg < 1:1352185/76‑1 (MQ=255)
aTTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAAt < 1:1402360/76‑1 (MQ=255)
tttGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATa < 2:1616343/76‑1 (MQ=255)
tttGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATa < 1:506137/76‑1 (MQ=255)
tttGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATa < 1:776941/76‑1 (MQ=255)
tttGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATa < 2:638635/76‑1 (MQ=255)
tttGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATa < 2:1731748/76‑1 (MQ=255)
ttGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATAc > 2:50184/1‑76 (MQ=255)
tGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATAcc > 1:1618834/1‑76 (MQ=255)
ttAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCgag > 1:1272828/1‑76 (MQ=255)
ttAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCgag > 1:417521/1‑76 (MQ=255)
aaaCACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGAt < 1:1034040/76‑1 (MQ=255)
aaaCACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGAt < 1:59226/76‑1 (MQ=255)
aaaCACACAGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAAAACCCgcgac > 2:1732613/1‑75 (MQ=255)
acacacAGAAAATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCa < 1:1578540/76‑1 (MQ=255)
cacaGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCTAGATCatat < 2:1505760/76‑1 (MQ=255)
acaGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATAtg < 2:926068/76‑1 (MQ=255)
aGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATAtgct > 1:313286/1‑76 (MQ=255)
aGAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATAtgct > 2:117284/1‑76 (MQ=255)
taaTATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATAtgctg > 2:17746/2‑76 (MQ=255)
gAATATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATAtgctg < 2:1125244/76‑1 (MQ=255)
aaTATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATAtgctgc > 2:67330/1‑76 (MQ=255)
aaTATATGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATAtgctgc > 1:1116548/1‑76 (MQ=255)
tatatGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCtt < 2:1441848/76‑1 (MQ=255)
atatGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTg < 2:220082/76‑1 (MQ=255)
atatGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTg > 1:1468043/1‑76 (MQ=255)
atGTGGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAg > 2:502133/1‑76 (MQ=255)
tgtgGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAgg > 2:134917/1‑76 (MQ=255)
tgGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGAt > 2:961231/1‑76 (MQ=255)
tgGTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGAt < 1:1213587/76‑1 (MQ=255)
ggTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGAtt > 2:1200539/1‑76 (MQ=255)
ggTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGAtt > 1:1296356/1‑76 (MQ=255)
ggTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGAtt > 1:1540301/1‑76 (MQ=255)
gTTTCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGAttt < 2:258462/76‑1 (MQ=255)
ttCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCt > 2:388019/1‑76 (MQ=255)
ttCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCt > 1:159515/1‑76 (MQ=255)
ttCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCt < 2:1418277/76‑1 (MQ=255)
tCGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTa > 1:512437/1‑76 (MQ=255)
cGAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTAc > 2:647793/1‑76 (MQ=255)
gAATGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTAcc > 1:1479908/1‑76 (MQ=255)
aaTGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTACCg < 1:3632/76‑1 (MQ=255)
aaTGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTACCg < 1:1241450/76‑1 (MQ=255)
aaTGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATAATATGCTGCTTGAGGATTTCTACCg > 2:767410/1‑76 (MQ=255)
tGTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTACCGTa > 1:1035649/1‑76 (MQ=255)
gTTTTTCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTACCGTaa < 1:1490110/76‑1 (MQ=255)
tttttCGACTGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTACCGTAAt > 2:1186623/1‑76 (MQ=255)
|
AACCTTCTTTTTCAAGCTGCCAATGATTTGCTTTAAACACACAGAATATATGTGGTTTCGAATGTTTTTCGACCGACGATTATCCCCTGCATCGACCGAATACCCGAGATCATATGCTGCTTGAGGATTTCTACCGTAAT > REL606/4347052‑4347191
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
