Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A86 F1 I1 R1
|
15 |
50.6 |
3276358 |
95.9% |
3142027 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
4,347,649 |
Δ42 bp |
coding (265‑306/477 nt) |
fxsA → |
inner membrane protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4347648 | 3 (0.060) | 46 (1.140) |
36/120 |
0.1 |
94.5% |
coding (264/477 nt) |
fxsA |
inner membrane protein |
| ? | REL606 |
4347691 = |
3 (0.070) | coding (307/477 nt) |
fxsA |
inner membrane protein |
GCAAAAAATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4347561‑4347648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcttttattaccgCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAGC > REL606/4347691‑4347765
GCAAAAAATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTG < 1:1628238/76‑1
AAAAAATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCT < 2:753297/76‑1
AAATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTT < 1:554301/76‑1
AATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTA < 1:358023/76‑1
GGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTA < 2:1207897/76‑1
GGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTA < 2:1099644/76‑1
GGCGGCTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCG < 2:1633327/76‑1
GGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCG > 2:334384/1‑76
cgaGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGG > 2:324325/4‑76
TGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTG > 2:679855/1‑76
AAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCA > 2:1052669/1‑76
AAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAA > 2:506133/1‑76
CCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAG < 1:1379368/76‑1
CAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCA > 1:27389/1‑76
CAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCA > 2:728973/1‑76
GGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTG < 1:85589/76‑1
GCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGA < 2:1408020/76‑1
CGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGAC > 2:386372/1‑76
CGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGAC > 1:89286/1‑76
GAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAG < 2:960014/76‑1
AGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGg > 1:1342316/1‑75
AGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGT > 1:369837/1‑76
ATGATAAAAAGTGTTTCGTTGATCATTGCCGGTTTGCTGCTTTTATAACCGCCGGTGCAAAAGCATCTGACAGTGA < 1:1637392/76‑1
taAAAAGTGTTTCGCTGATCATTGCGGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTT < 2:1318793/74‑1
TTAAAATTGTTTCTCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTT < 2:450773/76‑1
TTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTT < 1:241127/76‑1
TTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGCGAAGTT > 2:1031662/1‑76
TAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTG > 1:496985/1‑76
AAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGAT > 2:668108/1‑76
AAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGCGCAAAAGCATCTGCCAGTGAAGGTGAT > 2:410010/1‑76
AAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCACCGGTGCAAAAGCATCTGACAGTGAAGTTGATG > 2:379362/1‑76
gGTTTCGTTGTCCTTTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCG < 2:546715/75‑1
GTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGC > 1:1032350/1‑76
GTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGC > 1:640185/1‑76
GTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGC < 1:164633/76‑1
GTTTCGCGGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGC < 2:255117/76‑1
TCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATT < 2:377982/76‑1
GCTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTG > 1:1229391/1‑76
CTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGC > 1:172138/1‑76
CTGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGC < 1:468515/76‑1
TGATCATTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCG > 1:1296313/1‑76
ctTTGCGGGTTTTTTGATTTTATAACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTT < 2:945920/74‑1
TTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTC < 1:101802/76‑1
TTGCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTC > 2:42079/1‑76
GCCGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTC > 2:581148/1‑76
cgGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCG < 1:324325/74‑1
gGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGT < 1:625609/75‑1
CGGTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGT > 1:812008/1‑76
GTTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTAT < 2:511378/76‑1
TTTGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATG < 2:1453459/76‑1
gGCTGTTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCC < 2:843331/75‑1
TGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGTCAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCC > 2:1464615/1‑76
TGCTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCC < 1:1199847/76‑1
CTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCTAG > 2:822039/1‑76
CTGCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAG > 1:1262514/1‑76
GCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGC < 2:1000497/76‑1
GCTTTTATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGC > 2:632047/1‑76
TATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGG > 1:805599/1‑76
TATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGG < 2:1239106/76‑1
TATTACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGG > 1:515456/1‑76
TATTACCGCCGGGGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGCCGGCGG > 1:174045/1‑76
ttcCCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTT < 2:89286/73‑1
TACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTT < 1:113005/76‑1
ACCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTT > 2:1391319/1‑76
CCGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTA < 2:1441509/76‑1
CGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAG > 1:1581887/1‑76
CGCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAG < 2:1195864/76‑1
CGCCGGTGCAAAAGCATCTGACAGTGAAGCTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAG > 1:1581873/1‑76
GCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAGC > 2:566174/1‑76
GCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAGC < 2:1564826/76‑1
GCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAGC > 2:670902/1‑76
GCAAAAAATGGCGGCGGGTGAAAACCCAGCGGCGGAGATGATTAAAAGTGTTTCGCTGATCATTGCCGGTTTGCTGCTTTTATTACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4347561‑4347648
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgcttttattaccgCCGGTGCAAAAGCATCTGACAGTGAAGTTGATGCCGCATTTGCGCTTTTCTCGTATGCCAGGCGGCGGTTTTAGC > REL606/4347691‑4347765
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
