Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A38 F1 I1 R1 17 54.1 3391312 97.1% 3292963 75.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 4,349,332 Δ5 bp intergenic (‑199/‑73) yjeH ← / → groES predicted transporter/co‑chaperonin GroES

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 4349332 4349336 5 49 [0] [0] 49 yjeH/groES predicted transporter/co‑chaperonin GroES

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 43493310 (0.000)46 (0.880) 32/146 0.6 100% intergenic (‑198/‑78) yjeH/groES predicted transporter/co‑chaperonin GroES
?REL606 4349337 = 0 (0.000)intergenic (‑204/‑72) yjeH/groES predicted transporter/co‑chaperonin GroES

GATK/CNVnator alignment

N/A