Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A59 F1 I1 R1
|
21 |
55.8 |
3542164 |
96.7% |
3425272 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,349,335 |
T→A |
intergenic (‑202/‑74) |
yjeH ← / → groES |
predicted transporter/co‑chaperonin GroES |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,349,335 | 0 | T | A | 100.0%
| 220.3
/ NA
| 59 | intergenic (‑202/‑74) | yjeH/groES | predicted transporter/co‑chaperonin GroES |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (36/23); total (36/23) |
ATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTT > REL606/4349264‑4349404
|
aTTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACAcc < 1:1593495/76‑1 (MQ=255)
ttttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCa < 1:371518/76‑1 (MQ=255)
tttGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAg < 2:1334651/76‑1 (MQ=255)
tgCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCgg > 1:104339/1‑76 (MQ=255)
tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGaa > 2:796746/1‑76 (MQ=255)
tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGaa < 1:713660/76‑1 (MQ=255)
tGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGaa > 1:1690382/1‑76 (MQ=255)
gATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGaaa > 2:1102587/1‑76 (MQ=255)
tttttttCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAg < 2:1061510/76‑1 (MQ=255)
ttttctttttcCCCCTTTAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTc > 1:8702/1‑76 (MQ=255)
ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTc < 2:996481/76‑1 (MQ=255)
ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTc < 1:630523/76‑1 (MQ=255)
ttttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTc > 1:1510893/1‑76 (MQ=255)
tttctttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTcc > 1:1230289/1‑76 (MQ=255)
ctttttcCCCCTTGAACGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGc > 2:1284106/1‑76 (MQ=255)
tttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCg > 1:680115/1‑76 (MQ=255)
ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGgtgt < 1:1676402/76‑1 (MQ=255)
ttttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGt > 1:1551454/1‑76 (MQ=255)
tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTc < 2:1395990/76‑1 (MQ=255)
tttcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTc > 1:1233001/1‑76 (MQ=255)
tcCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc > 2:157992/1‑76 (MQ=255)
tcCCCCTGGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAc < 2:10760/76‑1 (MQ=255)
cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc > 1:279292/1‑76 (MQ=255)
cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc < 1:1368211/76‑1 (MQ=255)
cccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAcc > 2:237123/1‑76 (MQ=255)
ccccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCAccc > 2:1654506/1‑76 (MQ=255)
cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa > 1:746780/1‑76 (MQ=255)
cccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCa < 2:998157/76‑1 (MQ=255)
ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCAt > 2:271662/1‑76 (MQ=255)
ccTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCAt > 1:419533/1‑76 (MQ=255)
ccTTAAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCAt < 2:571268/76‑1 (MQ=255)
cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATa > 2:875486/1‑76 (MQ=255)
cTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATa > 1:968581/1‑76 (MQ=255)
ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATaa > 1:1354250/1‑76 (MQ=255)
ttGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATaa < 1:408544/76‑1 (MQ=255)
tGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAAc > 1:970697/1‑76 (MQ=255)
gcnggggCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa > 2:1246594/4‑76 (MQ=255)
gAAGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACa > 2:282285/1‑76 (MQ=255)
aaGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg < 1:852165/76‑1 (MQ=255)
aaGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg < 1:791423/76‑1 (MQ=255)
aaGGGGCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg > 2:723706/1‑76 (MQ=255)
aaGGGGCCAAGCCTCATCCCCATTGCTCGGGACGCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAg < 1:490674/76‑1 (MQ=255)
gggCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATa > 1:1192874/1‑76 (MQ=255)
gCGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACg < 2:675393/76‑1 (MQ=255)
cGAAGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACgg < 2:1712429/76‑1 (MQ=255)
aaGCCTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGAc > 2:1107357/1‑76 (MQ=255)
ccTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt < 1:1069806/76‑1 (MQ=255)
ccTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACttt < 2:104339/76‑1 (MQ=255)
cTCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtc > 1:402304/1‑76 (MQ=255)
tCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtct > 1:1524089/1‑76 (MQ=255)
tCATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtct > 1:1524118/1‑76 (MQ=255)
cATCCCCATTTCTCTGGACTCCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc > 2:1737741/1‑76 (MQ=255)
cATCCCCATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTtctc > 2:1177567/1‑76 (MQ=255)
cccATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg > 1:253857/1‑76 (MQ=255)
cccATTTCTCGGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAg < 1:687577/76‑1 (MQ=255)
ccATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg > 1:1253325/1‑76 (MQ=255)
ccATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAgg < 1:936123/76‑1 (MQ=255)
cATTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGga < 2:309511/76‑1 (MQ=255)
aTTTCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgag < 2:185198/76‑1 (MQ=255)
tttCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGgaga > 1:1457469/1‑76 (MQ=255)
ttCTCTGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag > 1:100646/1‑76 (MQ=255)
ttCTCTCGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGagag < 1:613217/76‑1 (MQ=255)
ctctGGACACCAGCTGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGtt < 1:104860/76‑1 (MQ=255)
ctctGGACACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGtt < 2:1009304/76‑1 (MQ=255)
|
ATTTTGTGCTGATCAGAATTTTTTTTCTTTTTCCCCCTTGAAGGGGCGAAGCCTCATCCCCATTTCTCTGGTCACCAGCCGGGAAACCACGTAAGCTCCGGCGTCACCCATAACAGATACGGACTTTCTCAAAGGAGAGTT > REL606/4349264‑4349404
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
