mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 17,340 | T→C | intergenic (‑382/‑148) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| RA | 474,807 | Δ1 bp | coding (499/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| MC | 547,700 | Δ42,623 bp | between IS1 | [nmpC]–[insK‑1] | 44 genes [nmpC], ybcR, ybcS, ybcT, ybcU, ECB_00510, nohB, ECB_00512, ECB_00513, ECB_00514, ECB_00515, ECB_00516, ECB_00517, appY, ompT, envY, ybcH, nfrA, nfrB, nfrB, ECB_00524, yhhI, ECB_00526, ECB_00527, ECB_00528, ECB_00529, ECB_00530, cusS, cusR, cusC, ylcC, cusB, cusA, pheP, ybdG, nfnB, ybdF, ybdJ, ybdK, insJ‑1, insK‑1, insB‑7, insA‑7, [insK‑1] |
| RA | 649,991 | C→T | A271T (GCA→ACA) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,609,130 | A→C | K285Q (AAG→CAG) | insF‑3 → | putative transposase for IS3 |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,886,192 | A→C | intergenic (‑22/+647) | yobF ← / ← yebO | hypothetical protein/hypothetical protein |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,968,634 | G→A | G305G (GGC→GGT) | speB ← | agmatinase |
| JC | 3,014,094 | (ACAGGC)3→2 | coding (675‑680/1137 nt) | ECB_02815 → | Capsule polysaccharide export inner‑membrane protein kpsE |
| RA | 3,414,325 | A→C | K101Q (AAA→CAA) | crp → | DNA‑binding transcriptional dual regulator |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| RA | 3,883,147 | (A)5→4 | intergenic (‑341/+276) | atpI ← / ← gidB | F0F1 ATP synthase subunit I/glucose‑inhibited division protein; b3740_1 |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 4,161,283 | G→T | R143L (CGT→CTT) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,194,365 | C→T | T214M (ACG→ATG) | metA → | homoserine O‑succinyltransferase |
| RA | 4,202,603 | A→G | intergenic (‑44/‑156) | iclR ← / → metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| RA | 4,349,335 | T→A | intergenic (‑202/‑74) | yjeH ← / → groES | predicted transporter/co‑chaperonin GroES |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |