Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A57 F1 I1 R1
|
16 |
65.9 |
4148770 |
97.1% |
4028455 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,282,445 |
C→T |
A163T (GCC→ACC) |
yjcR ← |
predicted membrane fusion protein of efflux pump |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,282,445 | 0 | C | T | 100.0%
| 194.2
/ NA
| 50 | A163T (GCC→ACC) | yjcR | predicted membrane fusion protein of efflux pump |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (22/28); total (22/28) |
ATCCACGCCGCTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTG > REL606/4282374‑4282515
|
aTCCACGCCGCTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGgtgcgc > 2:981153/1‑76 (MQ=255)
ccgcgcggcTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGCCATTAAGATCCGCTTCTGCGGTGCGCTg < 2:900327/73‑1 (MQ=255)
ccACGCCGCTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTg < 2:1534895/76‑1 (MQ=255)
cACGCCGCTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTgc > 1:148703/1‑76 (MQ=255)
ccgccgcTGGCGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTgcg < 1:1380705/75‑1 (MQ=255)
cgccgcTGACGGCGCTGGCGGCTGCCTGCGCCTGTAACAATATGGCATTCAGATCCGCTTCCgcggcgcgcggcgc > 2:1797834/1‑76 (MQ=255)
gcTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGtt > 2:1132945/1‑76 (MQ=255)
gACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGGTCtt > 1:1617818/1‑76 (MQ=255)
aCGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTg < 1:1184899/76‑1 (MQ=255)
aCGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTg < 2:1852859/76‑1 (MQ=255)
aCGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTg < 2:1121720/76‑1 (MQ=255)
gcgcGGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCAc < 2:1022404/76‑1 (MQ=255)
cgcTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACg < 1:1791916/76‑1 (MQ=255)
gcTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACgg < 2:763272/76‑1 (MQ=255)
ggcggcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCa > 1:1742019/1‑76 (MQ=255)
ggcggcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCa > 1:1757312/1‑76 (MQ=255)
ggcggcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCa < 2:100957/76‑1 (MQ=255)
gcggcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCaa > 1:96474/1‑76 (MQ=255)
gcggcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCaa > 1:72669/1‑76 (MQ=255)
cggcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAAc < 2:165899/76‑1 (MQ=255)
ncTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACAt > 1:208750/2‑76 (MQ=255)
gcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACAt < 1:666287/76‑1 (MQ=255)
gcTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACAt > 2:309156/1‑76 (MQ=255)
cTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATc < 2:868288/76‑1 (MQ=255)
gACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCtt < 1:821669/76‑1 (MQ=255)
gACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCtt < 2:1428981/76‑1 (MQ=255)
gACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCtt < 2:216112/76‑1 (MQ=255)
gACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCtt > 1:209462/1‑76 (MQ=255)
gACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCtt > 1:2047034/1‑76 (MQ=255)
aCTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTc > 2:1806978/1‑76 (MQ=255)
tGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCg < 2:1033101/76‑1 (MQ=255)
tGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCg < 2:1818720/76‑1 (MQ=255)
gcCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTg < 1:2051700/76‑1 (MQ=255)
cTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTgag < 1:298095/76‑1 (MQ=255)
cTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTgag > 2:670504/1‑76 (MQ=255)
cTGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTgag > 1:486088/1‑76 (MQ=255)
tGTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTgaga < 1:940343/76‑1 (MQ=255)
gTAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGAc < 1:1450642/76‑1 (MQ=255)
tAACAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACa > 1:1065248/1‑76 (MQ=255)
cAATACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACaaaa < 2:1375323/76‑1 (MQ=255)
aaTACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAAc > 2:1508648/1‑76 (MQ=255)
aTACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAAcc > 2:1640385/1‑76 (MQ=255)
aTACGGCATTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAAcc > 1:1542148/1‑76 (MQ=255)
aTTAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTc < 1:1747183/76‑1 (MQ=255)
tAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAg < 1:874715/76‑1 (MQ=255)
tAAGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAg < 1:795886/76‑1 (MQ=255)
aGATCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTa > 2:1205114/1‑76 (MQ=255)
tCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATg < 2:1426288/76‑1 (MQ=255)
tCCGCTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATg > 2:720714/1‑76 (MQ=255)
cTTCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTc > 2:1216595/1‑76 (MQ=255)
ttCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCg < 2:319816/76‑1 (MQ=255)
ttCTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCg < 2:417641/76‑1 (MQ=255)
cTGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGt > 1:244395/1‑76 (MQ=255)
tGCGGTGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTg > 1:928445/1‑76 (MQ=255)
|
ATCCACGCCGCTGACGGCGCTGGCGGCTGACTGCGCCTGTAACAATACGGCATTAAGATCCGCTTCTGCGGCGCGCTGCGCCGTTCTTGCACGGTCAACATCTTCCGCTGAGACAAAACCTTCTTTCAGTAATGGCTCGGTG > REL606/4282374‑4282515
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
