Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A84 F1 I1 R1
|
17 |
47.9 |
3074446 |
96.0% |
2951468 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,512,494 |
(TCATTC)2→3 |
intergenic (‑236/‑97) |
yhhX ← / → yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3512483 = | 2 (0.040) | 58 (1.320) |
43/138 |
0.1 |
98.4% |
intergenic (‑225/‑108) |
yhhX/yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
| ? | REL606 |
= 3512488 |
0 (0.000) | intergenic (‑230/‑103) |
yhhX/yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
CCTTTCAACATCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3512563‑3512483
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatgaGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCACATTG < REL606/3512488‑3512417
CCTTTCAACATCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAG < 1:1481662/76‑1
CTTTCAACATCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGA < 1:390441/76‑1
AACATCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAG > 2:252702/1‑76
TCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATG < 1:88131/76‑1
TCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATG < 1:892558/76‑1
TCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATG < 2:1222609/76‑1
TCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATG > 1:1503934/1‑76
CATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGA < 1:240339/76‑1
ATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGAT > 1:645967/1‑76
TTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATT < 2:1273983/76‑1
TGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTA < 1:813061/76‑1
TGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTA < 1:1178439/76‑1
GACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTAT > 2:1278662/1‑76
GACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTAT > 1:596626/1‑76
CTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTA < 1:299100/76‑1
TTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTAT > 1:1344156/1‑76
TTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTAT < 1:722874/76‑1
TTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATT < 2:1478421/76‑1
TTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATT > 2:1248622/1‑76
TCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTG > 1:996406/1‑76
ATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTC > 1:1328137/1‑76
GAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGA > 2:1321526/1‑76
TCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCA < 1:608164/76‑1
TCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCA < 1:55059/76‑1
CAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAG > 1:1331857/1‑76
CAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAG > 1:1161000/1‑76
CAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAG > 1:75214/1‑76
AAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGG > 2:544368/1‑76
AAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGG > 2:760225/1‑76
AATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGA < 2:53451/76‑1
GCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGA < 1:874325/76‑1
GCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGA < 1:1303171/76‑1
CATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGAC < 1:113300/76‑1
TTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGC > 2:840575/1‑76
CAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAG < 1:1130495/76‑1
CAAAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAG < 1:198970/76‑1
AAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAA < 1:1191706/76‑1
AAAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAA < 2:807288/76‑1
AAAGTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAAC > 2:39961/1‑76
GTGTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTG < 2:44157/76‑1
GTTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAA < 2:693493/76‑1
TTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAA < 2:28175/76‑1
TTGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAA > 2:1473331/1‑76
TGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAG > 1:1357449/1‑76
TGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAG > 1:1525155/1‑76
TGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAG > 2:1070253/1‑76
TGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAG < 1:396782/76‑1
TGGACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAG > 1:540558/1‑76
GACAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCA < 1:772888/76‑1
CAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACG > 2:109385/1‑76
CAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACG < 1:1087183/76‑1
CAAGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACG < 1:738117/76‑1
AGTGCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGAC < 1:1137071/76‑1
GCGAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATT < 1:852339/76‑1
GAATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGC < 1:1279694/76‑1
AATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCT > 1:941452/1‑76
ATGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTC < 1:193275/76‑1
TGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCA > 1:1059266/1‑76
TGAGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCA < 2:1415846/76‑1
AGAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCACA > 2:601174/1‑76
GAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCACAT < 1:1178737/76‑1
GAATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCACAT > 2:1371495/1‑76
AATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTTACATT > 2:1425938/1‑76
AATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCACATT > 2:1490107/1‑76
ATGAGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCACATTG < 1:573752/76‑1
CCTTTCAACATCATTGACTTTCAAATGCGAGTCAAATGCATTTTTTTGCAAAAAGTGTTGGACAAGTGCGAATGAGAATGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3512563‑3512483
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaatgaGAATGATTATTATTGTCTCGCGATCAGGAAGACCCTCGCGGAGAACCTGAAAGCACGACATTGCTCACATTG < REL606/3512488‑3512417
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
