Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A28 F1 I1 R1
|
15 |
45.6 |
2893554 |
96.7% |
2798066 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,512,503 |
C→T |
intergenic (‑245/‑88) |
yhhX ← / → yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,512,503 | 0 | C | T | 100.0%
| 221.6
/ NA
| 57 | intergenic (‑245/‑88) | yhhX/yhhY | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (30/27); total (30/27) |
GTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTAC > REL606/3512430‑3512572
|
gTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCa < 1:319672/76‑1 (MQ=255)
gTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCa < 1:1391764/76‑1 (MQ=255)
tCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCaa < 2:697499/76‑1 (MQ=255)
cGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAac < 2:362652/76‑1 (MQ=255)
tGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAacac > 1:1041745/1‑76 (MQ=255)
tGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGATCAacac > 1:1041753/1‑76 (MQ=255)
gCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACt < 1:630561/76‑1 (MQ=255)
cTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACtt < 2:516916/76‑1 (MQ=255)
tttCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACttt > 1:556439/1‑76 (MQ=255)
ttCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACtttt > 1:893374/1‑76 (MQ=255)
cAGGTTCTCCGCNAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTg > 1:21267/1‑76 (MQ=255)
cAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTg > 2:425579/1‑76 (MQ=255)
aGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGc < 2:1288686/76‑1 (MQ=255)
ggTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCa < 1:1137432/76‑1 (MQ=255)
ggTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCa < 1:499238/76‑1 (MQ=255)
gTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCaa > 1:445361/1‑76 (MQ=255)
ccGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCaaaaaaa < 2:305478/76‑1 (MQ=255)
ccGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCaaaaaaa > 1:428135/1‑76 (MQ=255)
ccGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCaaaaaaa > 1:460957/1‑76 (MQ=255)
cgAGGGTCTTCCTGATCGCGAGACAGTAATACTCATTCTANNCCGCACTTGTNNATCACTTTTTGCAAAAAAATGc > 1:1290465/1‑76 (MQ=255)
cgAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGc < 2:321069/76‑1 (MQ=255)
cgAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGc > 2:871547/1‑76 (MQ=255)
cgAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGc < 2:673863/76‑1 (MQ=255)
gAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCa > 1:715030/1‑76 (MQ=255)
gTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTg < 2:1139068/76‑1 (MQ=255)
tCTTCCTGACCGCGAGACAATANTAATCATTCTCATTCNCACTTGTTCAACAGTTTTAGCAAAACAATGCNATTGa > 1:24415/1‑76 (MQ=255)
ttCNTGTTCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTgccc < 2:1309036/76‑4 (MQ=255)
ttCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACt > 1:628977/1‑76 (MQ=255)
ntCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACt > 1:509365/2‑76 (MQ=255)
tCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTc < 2:631526/76‑1 (MQ=255)
tCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTc > 2:784336/1‑76 (MQ=255)
tCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTc < 1:517899/76‑1 (MQ=255)
tCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACANNTTCAACAATTNNTGCAAAAAAATGCAGTTGACTc > 1:1301923/1‑76 (MQ=255)
tGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCa < 2:1273268/76‑1 (MQ=255)
tGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTNNAACACTTTTTNNAGAAAAATGCATTTGACTCGCa > 1:1297545/1‑76 (MQ=255)
gATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCAt > 2:280201/1‑76 (MQ=255)
gATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCAt > 1:805416/1‑76 (MQ=255)
gATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCAt > 2:568809/1‑76 (MQ=255)
agaCAATAATAATCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAg > 1:1019155/1‑76 (MQ=255)
aataataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCaa > 1:1188638/1‑76 (MQ=255)
aataataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCaa < 1:468967/76‑1 (MQ=255)
ataataatCATTCTCATTCNCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAat > 1:1343531/1‑76 (MQ=255)
ataataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAat < 1:500577/76‑1 (MQ=255)
ataataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAat > 1:446230/1‑76 (MQ=255)
taataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAatg > 2:1246313/1‑76 (MQ=255)
taataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAatg > 1:998510/1‑76 (MQ=255)
taataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAatg > 2:520543/1‑76 (MQ=255)
aataatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAatga < 1:991816/76‑1 (MQ=255)
aatCATTCTCATTCGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGt > 1:765781/1‑76 (MQ=255)
tcattctcattcGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTg < 2:944708/76‑1 (MQ=255)
cattcGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGa < 2:977118/76‑1 (MQ=255)
cattcGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGa < 1:1162776/76‑1 (MQ=255)
ttcGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACa < 1:1134542/76‑1 (MQ=255)
tcGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAt > 2:987855/1‑76 (MQ=255)
cGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAtt < 1:425579/76‑1 (MQ=255)
cGCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAtt > 1:1278029/1‑76 (MQ=255)
gCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAttt < 2:1424645/76‑1 (MQ=255)
gCACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACAttt < 1:694852/76‑1 (MQ=255)
cACTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTa > 2:827647/1‑76 (MQ=255)
aCTTGTTCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTAc > 1:611515/1‑76 (MQ=255)
|
GTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCGCGAGACAATAATAATCATTCTCATTCGCACTTGTCCAACACTTTTTGCAAAAAAATGCATTTGACTCGCATTTGAAAGTCAATGATGTTGAAAGGGACATTTAC > REL606/3512430‑3512572
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
