breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	681,881	T→A	I181F (ATC→TTC)	nagD ←	UMP phosphatase
MC JC	1,299,879	Δ6,195 bp		[oppA]–[cls]	[oppA], oppB, oppC, oppD, oppF, yciU, [cls]
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
RA	1,356,628	C→T	A310T (GCC→ACC)	ycjJ ←	putrescine importer
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,131,466	(A)9→8	intergenic (‑125/+175)	gatY ← / ← fbaB	D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	3,007,369	A→T	L154* (TTG→TAG)	ECB_02804 ←	conserved hypothetical protein
RA	3,252,009	C→A	C251F (TGC→TTC)	nusA ←	transcription elongation factor NusA
JC	3,512,494	(TCATTC)2→3	intergenic (‑236/‑97)	yhhX ← / → yhhY	predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase
RA	3,555,895	C→A	P277Q (CCA→CAA)	yhhI →	predicted transposase
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	3,928,260	T→A	I15N (ATC→AAC)	rho →	transcription termination factor Rho
RA	4,202,194	+C	coding (366/825 nt)	iclR ←	DNA‑binding transcriptional repressor
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)