Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A17 F1 I1 R1
|
15 |
26.4 |
1686296 |
95.9% |
1617157 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,512,038 |
Δ415 bp |
|
[yhhX] |
[yhhX] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3512038 |
3512452 |
415 |
23 [0] |
[3] 26 |
[yhhX] |
[yhhX] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3512037 | 0 (0.000) | 21 (0.870) |
20/138 |
0.3 |
93.3% |
coding (222/1038 nt) |
yhhX |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| ? | REL606 |
3512453 = |
3 (0.120) | intergenic (‑195/‑138) |
yhhX/yhhY |
predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
GATK/CNVnator alignment
N/A
