Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F1 I1 R1
|
17 |
44.3 |
2973330 |
95.1% |
2827636 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,511,675 |
Δ8 bp |
intergenic (+139/‑393) |
acrD → / → yffB |
aminoglycoside/multidrug efflux system/hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2511674 | 1 (0.020) | 47 (1.140) |
41/136 |
0.1 |
98.0% |
intergenic (+138/‑401) |
acrD/yffB |
aminoglycoside/multidrug efflux system/hypothetical protein |
| ? | REL606 |
2511683 = |
1 (0.020) | intergenic (+147/‑392) |
acrD/yffB |
aminoglycoside/multidrug efflux system/hypothetical protein |
CCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2511593‑2511674
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagttcACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATATACCGTGGTGAAGCTAATTTA > REL606/2511683‑2511757
CCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTC < 2:747735/76‑1
CTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCC > 2:1264364/1‑76
TCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTT < 1:1154406/76‑1
TCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTT > 2:271287/1‑76
TCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTT < 2:275388/76‑1
AGCGGGTTCTTGGTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCCGTTCA > 2:54304/1‑76
CGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACG < 1:849190/76‑1
GGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATCACATCGATAAAGTCTTTCCAGTTCACGT > 1:233786/1‑76
GTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTC > 2:1256199/1‑76
GTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTC < 2:522083/76‑1
TTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCA < 2:763000/76‑1
TCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGACTAACTTCGAGAAAGTCTTTCCCGTTNACGTTCAA > 2:250029/1‑76
CTTGCTGGTTGTACGTCGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAAT < 1:35605/76‑1
TTGCTGTTTGTACTTTGTCTCAGGANTGACTTACGACGCATAACTTCNATATAGTCTTTCCAGTTCACGTTCAATC < 1:216189/76‑1
TTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATC > 2:1435233/1‑76
GCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATNAAGTCTTTCCAGTTCACGTTCAATCAT < 1:1300001/76‑1
GCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCAT < 2:521011/76‑1
GCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCAT < 1:866607/76‑1
CTGTTTGTACTTTGTCTCAGGAATTACTTGCGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATA < 1:749850/76‑1
CTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATA > 1:610431/1‑76
CTGTTTGTACTTTGTCTCAGGAATTACCTACAAANCATACCTNCGNTANAGTCCTTCGAGTTCACGTTCAATCATA > 1:1277222/1‑76
TGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAA < 1:354321/76‑1
GTTTGTAGTTTGTCGCAGGAATTACTTACGGAGCATAACCTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAAC < 1:33380/76‑1
TTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACA < 2:298165/76‑1
TTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACA < 1:90279/76‑1
TTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAA < 1:1038576/76‑1
TGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAAC > 1:542511/1‑76
GTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACC > 1:412673/1‑76
ACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTC > 2:289926/1‑76
TGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTT < 1:1122683/76‑1
TCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAA > 2:144811/1‑76
AGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATT > 2:996481/1‑76
GGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTA < 1:736274/76‑1
GGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTA < 1:684332/76‑1
AATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATG > 2:402866/1‑76
ATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGG > 1:461294/1‑76
TACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGT < 1:829304/76‑1
ACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTA < 2:112831/76‑1
CTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTAT > 1:377136/1‑76
TTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATT < 2:1327592/76‑1
TACGAAGCATAACTTCGATACAGTCTTTCCAGTTCACGTTCAATCATAACAACGTCTCTTATAATTATGGGTATTC > 2:121064/1‑76
AAGCATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACG > 1:513662/1‑76
ATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAA > 2:989820/1‑76
ATAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAA < 1:1362823/76‑1
TAACTTCGATAAAGTCTTTCCAGTTCANGTTCAATCCTAACAACCTCTCTTATAATTATGGGTATTCTACGGAAAC > 1:1292625/1‑76
TAACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAAC > 1:1154348/1‑76
ACTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAA < 1:355884/76‑1
CTTCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAAT > 1:590744/1‑76
TCGATAAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATAT < 1:1115704/76‑1
AAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATATACCGT < 1:1403938/76‑1
AAAGTCTTTCCAGTTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATACTACGGAAACAATATACCGT > 1:1467778/1‑76
AAGTCTTTCCAGTTAACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTTTACGGAAACAAGATACCGTG < 2:24973/76‑1
TTCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATATACCGTTGTGAAGCTAATT < 2:513660/76‑1
TCACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATATACCGTGGTGAAGCTAATTT < 1:303975/76‑1
CACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATATACCGTGGTGAAGCTAATTTA > 1:570783/1‑76
CCTGCTCAGCGGGTTCTTGCTGTTTGTACTTTGTCTCAGGAATTACTTACGAAGCATAACTTCGATAAAGTCTTTCCAGTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2511593‑2511674
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccagttcACGTTCAATCATAACAACCTCTCTTATAATTATGGGTATTCTACGGAAACAATATACCGTGGTGAAGCTAATTTA > REL606/2511683‑2511757
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
