mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC JC | 16,990 | IS150 (+) +3 bp | intergenic (‑32/‑496) | mokC ← / → nhaA | regulatory protein for HokC, overlaps CDS of hokC/pH‑dependent sodium/proton antiporter |
| RA | 365,031 | C→A | V249V (GTC→GTA) | sbmA → | predicted transporter |
| RA | 474,884 | A→C | L141* (TTA→TGA) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| JC JC | 1,305,487 | IS150 (–) +3 bp | coding (751‑753/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,500,863 | G→A | A134T (GCG→ACG) | tktB → | transketolase 2, thiamin‑binding |
| JC | 2,511,675 | Δ8 bp | intergenic (+139/‑393) | acrD → / → yffB | aminoglycoside/multidrug efflux system/hypothetical protein |
| RA | 3,447,556 | T→C | E64G (GAA→GGA) | aroK ← | shikimate kinase I |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,901 | G→T | A229S (GCT→TCT) | rho → | transcription termination factor Rho |
| RA | 4,162,470 | A→C | T539P (ACC→CCC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | 4,202,303 | +TG | coding (257/825 nt) | iclR ← | DNA‑binding transcriptional repressor |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 4275743 = | 41 (0.900) | 37 (0.940) | 33/130 | 0.2 | 52.3% | coding (205/690 nt) | yjcO | hypothetical protein |
| ? | REL606 | = 4359351 | 32 (0.810) | coding (1679/1809 nt) | frdA | fumarate reductase | |||||