Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A61 F1 I1 R1
|
19 |
50.7 |
3232285 |
96.8% |
3128851 |
74.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
4,201,809 |
Δ3,666 bp |
|
[iclR]–[metH] |
[iclR], [metH] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
4201809 |
4205474 |
3666 |
51 [1] |
[1] 50 |
[iclR]–[metH] |
[iclR],[metH] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4201808 | 1 (0.020) | 46 (1.050) |
37/130 |
0.2 |
98.0% |
coding (752/825 nt) |
iclR |
DNA‑binding transcriptional repressor |
| ? | REL606 |
4205475 = |
1 (0.020) | coding (2717/3684 nt) |
metH |
B12‑dependent methionine synthase |
GATK/CNVnator alignment
N/A
