breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	474,455	A→G	L284P (CTG→CCG)	ybaL ←	predicted transporter with NAD(P)‑binding Rossmann‑fold domain
JC JC	1,305,487	IS150 (–) +3 bp	coding (751‑753/1461 nt)	cls ←	cardiolipin synthetase
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
RA	2,619,387	C→A	intergenic (‑5/+20)	tadA ← / ← yfhB	tRNA‑specific adenosine deaminase/hypothetical protein
RA	2,625,089	G→T	P156Q (CCG→CAG)	rncS ←	ribonuclease III
RA	3,247,298	A→G	D238D (GAT→GAC)	truB ←	tRNA pseudouridine synthase B
RA	3,259,207	G→A	A33V (GCG→GTG)	glmM ←	phosphoglucosamine mutase
RA	3,465,147	T→A	D41V (GAT→GTT)	ompR ←	osmolarity response regulator
RA	3,497,971	G→A	A22V (GCT→GTT)	glgP ←	glycogen phosphorylase
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
RA	3,928,947	A→G	E244G (GAA→GGA)	rho →	transcription termination factor Rho
RA	4,097,224	G→A	Q117* (CAG→TAG)	glpF ←	glycerol facilitator
RA	4,162,569	A→T	I572F (ATC→TTC)	rpoB →	DNA‑directed RNA polymerase subunit beta
MC JC	4,201,809	Δ3,666 bp		[iclR]–[metH]	[iclR], [metH]
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)

Unassigned missing coverage evidence
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	711405	711526	122	14 [12]	[12] 13	[ybfA]	[ybfA]