Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A66 F1 I1 R1
|
19 |
57.4 |
3651244 |
97.1% |
3545357 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
1,619,870 |
IS150 (+) +3 bp |
intergenic (‑107/+103) |
hokD ← / ← ECB_01533 |
small toxic polypeptide/conserved hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
664688 = | NA (NA) | 102 (1.830) |
61/146 |
0.0 |
94.2% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 1619872 |
6 (0.110) | intergenic (‑109/+103) |
hokD/ECB_01533 |
small toxic polypeptide/conserved hypothetical protein |
| * |
? |
REL606 |
= 666130 | NA (NA) | 74 (1.290) |
43/150 |
0.3 |
92.2% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
1619870 = |
6 (0.110) | intergenic (‑107/+105) |
hokD/ECB_01533 |
small toxic polypeptide/conserved hypothetical protein |
Only 100 of 123 total aligned reads displayed.
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664764‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTTAGC < REL606/1619872‑1619798
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:1811456/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:1118068/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 2:1327108/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 2:1329899/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC > 1:1510045/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:1443933/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:1443485/76‑1
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTAC < 1:1323998/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:408711/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 2:1130555/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:1666286/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 2:1709112/1‑76
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:1377430/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA < 1:1377404/76‑1
TTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA > 2:58951/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 2:963408/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 2:543451/1‑76
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG < 1:1538747/76‑1
TTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAG > 1:1540792/1‑76
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGat < 1:1765965/76‑3
TCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTT > 2:1718197/1‑76
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGatg > 2:745653/1‑73
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTA < 2:650060/76‑1
CAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTA < 1:1283503/76‑1
AAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAA > 1:165826/1‑76
GGGTATTTTTGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATT < 1:892061/76‑1
GGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATT < 1:892050/76‑1
GGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTA < 1:612792/76‑1
TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACG > 2:1357486/1‑76
TATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACG > 1:678180/1‑76
ATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGC > 1:828268/1‑76
TTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCG > 1:827336/1‑76
TGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCC > 1:923825/1‑76
GGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCT < 1:1116563/76‑1
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGC > 2:1236741/1‑76
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGC > 2:288993/1‑76
CTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGC > 2:971969/1‑76
TTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCA > 1:416597/1‑76
TTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAA > 2:612263/1‑76
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAG < 1:1264358/76‑1
TGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAG < 1:721880/76‑1
GACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATTGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGA < 1:1132555/76‑1
ACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGAC > 2:891170/1‑76
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACG < 1:1105003/76‑1
CATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACG < 2:661247/76‑1
ATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTT < 2:1494209/76‑1
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAA < 2:96552/76‑1
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAA > 1:1229372/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAA > 1:154098/1‑76
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAA < 2:322746/76‑1
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAA < 2:861188/76‑1
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAA < 2:1229372/76‑1
TAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGAGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAA > 1:802450/1‑76
GGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACA > 1:84840/1‑76
GGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATT < 1:33348/76‑1
CTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAA < 2:138741/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAAT < 1:267375/76‑1
TATTCCATTTCATCGTCCAACAAAATGGGAGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAAT > 1:1322062/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATC > 2:367800/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATC > 1:859354/1‑76
ATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATC > 1:659383/1‑76
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCT < 2:778517/76‑1
TTCCATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCT < 2:610747/76‑1
TTCCATTTCATCGTCCAACAAAAGGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCT < 2:610760/76‑1
CATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAG < 1:299451/76‑1
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGG > 1:399662/1‑76
ATTTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGG < 2:894927/76‑1
TTCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCC > 1:491193/1‑76
TCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCA > 1:1424243/1‑76
TCATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCA > 2:1182527/1‑76
ATCGTCCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAAT < 2:37549/76‑1
CCAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCAT < 1:1302062/76‑1
CAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATG > 2:906853/1‑76
CAACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATG < 2:640098/76‑1
AACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGC > 1:513378/1‑76
AACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGC > 2:1528652/1‑76
AACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGC < 1:1739946/76‑1
ACAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAATATTAATCTGAGGCCAATTTCATGCT < 2:146141/76‑1
CAAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTA > 2:618195/1‑76
AAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAG > 2:462402/1‑76
AAAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAG > 1:1742653/1‑76
AAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGA < 2:1486602/76‑1
AAATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGA > 1:1653125/1‑76
ATGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACA > 2:963581/1‑76
TGGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACAC < 1:388411/76‑1
GGGTGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACA > 1:424173/1‑76
TGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGT > 2:1756955/1‑76
TGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGT > 2:408536/1‑76
TGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGT > 2:1513366/1‑76
TGCAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATGTCATGCTAGACACATGT < 1:891526/76‑1
CAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAG > 2:1818538/1‑76
CAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAG > 1:1594892/1‑76
CAGTACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAG > 1:70447/1‑76
TACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTT < 2:5714/76‑1
TACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTT > 1:111133/1‑76
ACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTTA > 1:579334/1‑76
ACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTTA < 1:1236741/76‑1
ACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTTA > 1:1701275/1‑76
ACAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTTA > 1:332340/1‑76
CAGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTTAG > 1:1427928/1‑76
CTTTTCAAAAGGGTATTTTGGCTTTGACATATTAGGGGCTATTCCATTTCATCGTCCAACAAAATGGGTGCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/664764‑664688
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caGTTAACATTACGCGTCCTGCAAGACGCTTAACATTAATCTGAGGCCAATTTCATGCTAGACACATGTAGGTTAGC < REL606/1619872‑1619798
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
