mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 99,763 | C→A | R320S (CGC→AGC) | mraY → | phospho‑N‑acetylmuramoyl‑pentapeptide‑ transferase |
| JC JC | 433,624 | Δ2 bp :: IS186 (–) +8 bp | coding (119‑126/273 nt) | hupB → | HU, DNA‑binding transcriptional regulator, beta subunit |
| RA | 1,104,916 | A→T | D409E (GAT→GAA) | ycdR ← | predicted enzyme associated with biofilm formation |
| MC JC JC | 1,305,483 | +ATC :: IS150 (+) Δ4 bp | coding (754‑757/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC JC | 1,619,870 | IS150 (+) +3 bp | intergenic (‑107/+103) | hokD ← / ← ECB_01533 | small toxic polypeptide/conserved hypothetical protein |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| JC JC | 1,976,782 | IS150 (+) +3 bp | coding (39‑41/672 nt) | yedW ← | predicted DNA‑binding response regulator in two‑component system with YedV |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 3,021,896 | (T)9→8 | coding (789/1140 nt) | ECB_02821 ← | hypothetical protein |
| RA | 3,145,932 | C→T | T23T (ACC→ACT) | rpoD → | RNA polymerase sigma factor |
| RA | 3,498,004 | G→A | T11M (ACG→ATG) | glgP ← | glycogen phosphorylase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,833 | T→C | V206A (GTT→GCT) | rho → | transcription termination factor Rho |
| RA | 4,168,256 | A→C | Y1099S (TAC→TCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 4,202,158 | A→C | I134M (ATT→ATG) | iclR ← | DNA‑binding transcriptional repressor |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |