mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 4,393,061 | 0 | T | G | 51.3% | 26.4 / 56.1 | 37 | V211G (GTG→GGG) | aidB | isovaleryl CoA dehydrogenase |
| * | REL606 | 1,004,106 | 0 | A | C | 45.1% | 62.0 / 21.4 | 51 | intergenic (‑32/+570) | ompF/asnS | outer membrane porin 1a (Ia;b;F)/asparaginyl‑tRNA synthetase |
| * | REL606 | 2,631,772 | 0 | A | C | 38.0% | 82.0 / 19.4 | 50 | intergenic (‑267/‑141) | rpoE/nadB | RNA polymerase, sigma 24 (sigma E) factor/L‑aspartate oxidase |
| * | REL606 | 154,497 | 0 | T | G | 37.9% | 110.7 / 16.5 | 58 | A191A (GCA→GCC) | yadL | predicted fimbrial‑like adhesin protein |
| * | REL606 | 3,492,082 | 0 | T | G | 33.3% | 110.3 / 30.0 | 60 | V490G (GTG→GGG) | glpD | sn‑glycerol‑3‑phosphate dehydrogenase, aerobic, FAD/NAD(P)‑binding |
| * | REL606 | 3,691,844 | 0 | T | G | 30.0% | 101.7 / 11.6 | 50 | N226T (AAC→ACC) | yiaY | predicted Fe‑containing alcohol dehydrogenase |
| * | REL606 | 1,484,105 | 0 | A | G | 28.6% | 59.0 / 15.0 | 35 | G55G (GGA→GGG) | ydcU | predicted spermidine/putrescine transporter subunit |
| * | REL606 | 2,296,329 | 0 | A | C | 28.3% | 123.0 / 13.0 | 53 | intergenic (‑149/‑66) | inaA/yfaH | hypothetical protein/hypothetical protein |
| * | REL606 | 1,875,483 | 0 | G | C | 25.5% | 229.0 / 80.4 | 98 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 2,174,648 | 0 | T | G | 21.9% | 97.1 / 11.4 | 41 | V409G (GTG→GGG) | dld | D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | 2041277 = | 22 (0.380) | 8 (0.150) | 7/136 | 5.3 | 16.2% | coding (107/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041470 = | 63 (1.220) | coding (1351/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2042137 = | 53 (0.930) | 6 (0.120) | 5/132 | 6.0 | 11.3% | coding (684/1428 nt) | wzx | O antigen translocase (Wzx) |
| ? | REL606 | 2042551 = | 48 (0.960) | coding (270/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2039854 = | 38 (0.660) | 7 (0.140) | 5/134 | 6.1 | 12.7% | coding (275/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2040304 = | 62 (1.210) | coding (1080/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | 2041245 = | 35 (0.610) | 5 (0.090) | 5/140 | 6.3 | 12.6% | coding (139/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041495 = | 37 (0.690) | coding (1326/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | = 2039596 | 42 (0.730) | 5 (0.100) | 4/130 | 6.5 | 11.5% | coding (99/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | = 2039906 | 41 (0.830) | coding (223/438 nt) | vioB | VioB, involved in dTDP‑N‑acetylviosamine synthesis | |||||
| * | ? | REL606 | 2038074 = | 50 (0.870) | 5 (0.100) | 4/134 | 6.6 | 9.6% | coding (57/1176 nt) | wzy | O antigen polymerase (Wzy) |
| ? | REL606 | 2038286 = | 50 (0.980) | coding (663/822 nt) | wbbB | putative glycosyltransferase WbbB | |||||
| * | ? | REL606 | 2039335 = | 31 (0.540) | 5 (0.100) | 4/138 | 6.8 | 12.4% | coding (360/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039563 = | 42 (0.800) | coding (132/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||
| * | ? | REL606 | = 3582336 | 71 (1.240) | 4 (0.070) | 4/140 | 6.9 | 5.5% | coding (356/1224 nt) | yhiS | hypothetical protein |
| ? | REL606 | = 3582485 | 71 (1.330) | coding (505/1224 nt) | yhiS | hypothetical protein | |||||
| * | ? | REL606 | 2040964 = | 36 (0.630) | 6 (0.110) | 4/140 | 6.9 | 11.3% | coding (420/1113 nt) | vioA | VioA, involved in dTDP‑N‑acetylviosamine synthesis |
| ? | REL606 | 2041449 = | 61 (1.140) | coding (1372/1428 nt) | wzx | O antigen translocase (Wzx) | |||||
| * | ? | REL606 | 2039188 = | 24 (0.420) | 6 (0.110) | 4/140 | 6.9 | 15.1% | coding (507/747 nt) | wbbA | putative glycosyltransferase WbbA |
| ? | REL606 | 2039561 = | 45 (0.840) | coding (134/747 nt) | wbbA | putative glycosyltransferase WbbA | |||||