Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F1 I1 R1
|
14 |
23.9 |
1506608 |
98.1% |
1477982 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,498,019 |
G→A |
T6I (ACA→ATA) |
glgP ← |
glycogen phosphorylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,498,019 | 0 | G | A | 100.0%
| 71.8
/ NA
| 21 | T6I (ACA→ATA) | glgP | glycogen phosphorylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/9); total (12/9) |
GTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACT > REL606/3497953‑3498088
|
gTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAg > 1:711124/1‑76 (MQ=255)
cATCAGCTTGTAAGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTc > 2:752966/1‑76 (MQ=255)
cAGCTTGTAAGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCata < 1:434097/76‑1 (MQ=255)
cTTTTAAGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAg < 1:574603/76‑1 (MQ=255)
ttGTAAGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAgg > 1:710124/1‑76 (MQ=255)
aGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGttt < 2:709623/76‑1 (MQ=255)
aTAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTg > 1:580528/1‑76 (MQ=255)
aTAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTg < 2:576865/76‑1 (MQ=255)
gagTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGaaa < 1:349586/76‑1 (MQ=255)
aaGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTc > 1:84158/1‑76 (MQ=255)
aaGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTc > 2:565394/1‑76 (MQ=255)
aGGGCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCa > 2:675386/1‑76 (MQ=255)
gggCTTCTACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCaa < 2:218542/76‑1 (MQ=255)
gCTTCTACGCTAAGCGTGGGCGATGGATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGc < 1:591606/76‑1 (MQ=255)
tACGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAg > 2:214827/1‑76 (MQ=255)
cGCTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTa > 2:236600/1‑76 (MQ=255)
cTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTaaa < 1:731044/76‑1 (MQ=255)
cTAAGCGTGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTaaa > 1:287654/1‑76 (MQ=255)
tGGGCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACg > 2:366849/1‑76 (MQ=255)
ggCGATGAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGt > 2:42025/1‑76 (MQ=255)
gAATATATAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACt < 1:175732/76‑1 (MQ=255)
|
GTAAACATCAGCTTGTAAGCGATAGAGTGCTTAAGGGCTTCTACGCTAAGCGTGGGCGATGAATATGTAAACGGAGCATTCATATAGGCGTTTCCTGAAAACTATTTCAAGCGATAGTAAAGCTCACGGTACGACT > REL606/3497953‑3498088
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
