Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A79 F1 I1 R1
|
19 |
52.0 |
3333102 |
95.7% |
3189778 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,591,144 |
T→C |
N158S (AAT→AGT) |
ydeH ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,591,144 | 0 | T | C | 100.0%
| 205.9
/ NA
| 49 | N158S (AAT→AGT) | ydeH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (23/26); total (23/26) |
ATCGCCGGTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGATTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTCA > REL606/1591071‑1591216
|
aTCGCCGGTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTc > 1:1303998/1‑76 (MQ=255)
tCGCCGGTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCa < 1:1088208/76‑1 (MQ=255)
gCCGGTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCaga < 1:1365825/76‑1 (MQ=255)
ccGGTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCagag < 2:650461/76‑1 (MQ=255)
cGGTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAgg > 2:1146538/1‑76 (MQ=255)
ggTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGc < 1:1268908/76‑1 (MQ=255)
ggTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGc < 1:505465/76‑1 (MQ=255)
ggTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGc > 1:158436/1‑76 (MQ=255)
ttAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTc < 2:699879/76‑1 (MQ=255)
ttAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTc < 1:530404/76‑1 (MQ=255)
ttAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTc < 2:1206962/76‑1 (MQ=255)
ttAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTc < 2:854693/76‑1 (MQ=255)
tAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCa > 2:1184114/1‑76 (MQ=255)
tAAATGCCCGTAGGTATCATTAACCAATTTAAATCGATCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCa < 1:329173/76‑1 (MQ=255)
aaaTGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAg < 2:834500/76‑1 (MQ=255)
gCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGtt < 1:1232200/76‑1 (MQ=255)
gCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGtt > 1:994058/1‑76 (MQ=255)
cccGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTg > 2:421762/1‑76 (MQ=255)
gTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGt > 2:372150/1‑76 (MQ=255)
tAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTa > 2:1635182/1‑76 (MQ=255)
aGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTaa > 1:536447/1‑76 (MQ=255)
aGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTaa < 2:716014/76‑1 (MQ=255)
aGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTaa < 2:1320926/76‑1 (MQ=255)
tATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACtg < 2:179645/76‑1 (MQ=255)
cATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACtgatg < 2:485930/76‑1 (MQ=255)
ttAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTgatgat < 2:538245/76‑1 (MQ=255)
aCCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCaa < 1:400521/76‑1 (MQ=255)
aaTTTAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAgg < 1:678669/76‑1 (MQ=255)
tttAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGAt > 1:53695/1‑76 (MQ=255)
ttAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGAtt < 1:1164051/76‑1 (MQ=255)
ttAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGAtt > 1:1281601/1‑76 (MQ=255)
tAAATCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATtc < 1:830694/76‑1 (MQ=255)
aaaTCGGTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATtca < 1:120256/76‑1 (MQ=255)
gTCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGa < 1:595033/76‑1 (MQ=255)
tCAATATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGaa > 2:830607/1‑76 (MQ=255)
aaTATCCAACAACATTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAAcc > 2:1324707/1‑76 (MQ=255)
caacaTTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGcccc > 1:612566/1‑76 (MQ=255)
caacaTAAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGcccc < 1:943219/76‑1 (MQ=255)
aacaTTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCg < 2:994986/76‑1 (MQ=255)
acaTTAAATAAAGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCgg > 1:1663165/1‑76 (MQ=255)
aaataaaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATc > 2:964474/1‑76 (MQ=255)
aaataaaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATc > 2:1432161/1‑76 (MQ=255)
aataaaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATcc > 2:1359825/1‑76 (MQ=255)
aataaaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATcc > 2:158654/1‑76 (MQ=255)
aaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTc > 2:692801/1‑76 (MQ=255)
aaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTc > 1:1342987/1‑76 (MQ=255)
aaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTc > 2:211170/1‑76 (MQ=255)
aaGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTc > 2:974018/1‑76 (MQ=255)
aGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTCa < 2:639348/76‑1 (MQ=255)
aGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTCa > 1:984201/1‑76 (MQ=255)
aGACTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTCa < 2:735449/76‑1 (MQ=255)
|
ATCGCCGGTTAAATGCCCGTAGGTATCATTAACCAATTTAAATCGGTCAATATCCAACAACATTAAATAAAGATTCAGAGGCTCAGCGTTGCGTAACTGATGATCAAAGGATTCATCAAGAACCCGACGCCCCGGCAATCCCGTCA > REL606/1591071‑1591216
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
