Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A105 F1 I1 R1
|
16 |
277.3 |
18051348 |
92.9% |
16769702 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,592,630 |
A→T |
D31V (GAT→GTT) |
ydeJ → |
competence damage‑inducible protein A |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,592,630 | 0 | A | T | 97.2%
| 1128.1
/ 11.5
| 288 | D31V (GAT→GTT) | ydeJ | competence damage‑inducible protein A |
| Reads supporting (aligned to +/- strand): ref base A (4/4); new base T (164/116); total (168/120) |
| Fisher's exact test for biased strand distribution p-value = 7.23e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.98e-01 |
Only 100 of 298 total aligned reads displayed.
AAAATTGTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGATCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGCTGAAGA > REL606/1592557‑1592702
|
aaaTTGTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCa < 2:8452971/76‑1 (MQ=255)
aaaTTGCACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCa > 1:2175204/1‑76 (MQ=255)
aaTTGTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCaa > 2:5811089/1‑76 (MQ=255)
aTTGTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAAt > 2:5154040/1‑76 (MQ=255)
ttGTACAACTTGTAGATACCGATATTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAAtt > 1:1647405/1‑76 (MQ=255)
tggaCATCTTTTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGATCAATTa < 1:1013570/73‑1 (MQ=255)
tGTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTa > 1:7341651/1‑76 (MQ=255)
gTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTAc < 2:7952497/76‑1 (MQ=255)
gTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTAc > 1:7616957/1‑76 (MQ=255)
tACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACg > 2:4877125/1‑76 (MQ=255)
aaCTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCtt > 2:6584750/1‑76 (MQ=255)
aCTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTa > 1:3324492/1‑76 (MQ=255)
cTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTaa < 2:3969361/76‑1 (MQ=255)
cTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTaa < 1:5814282/76‑1 (MQ=255)
ttGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAAc < 2:2300174/76‑1 (MQ=255)
ttGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAAc > 2:6041087/1‑76 (MQ=255)
tGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACt > 1:6830417/1‑76 (MQ=255)
tGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACt > 2:7297151/1‑76 (MQ=255)
tGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACt < 1:8724027/76‑1 (MQ=255)
gTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTa > 1:5623068/1‑76 (MQ=255)
tAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTAc > 2:8528318/1‑76 (MQ=255)
tAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTAc < 2:5875106/76‑1 (MQ=255)
gATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTAccg < 2:7439943/76‑1 (MQ=255)
aTACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTAccgc > 1:5450305/1‑76 (MQ=255)
aTACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTAccgc > 2:1609889/1‑76 (MQ=255)
tACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTAccgcc < 1:311241/76‑1 (MQ=255)
aCCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTAccgccg < 2:3540113/76‑1 (MQ=255)
cGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGaa > 1:4827673/1‑76 (MQ=255)
gATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAAt > 2:5332251/1‑76 (MQ=255)
aTACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATc > 1:6516849/1‑76 (MQ=255)
tACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCa < 2:3131243/76‑1 (MQ=255)
tACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCa < 1:4659953/76‑1 (MQ=255)
cTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATg > 1:1836095/1‑76 (MQ=255)
cTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATg > 1:4234462/1‑76 (MQ=255)
cTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATg > 2:4480131/1‑76 (MQ=255)
tATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGc > 2:3493870/1‑76 (MQ=255)
tATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGc > 2:8827804/1‑76 (MQ=255)
tATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGc > 1:2064552/1‑76 (MQ=255)
tATTGAAAACCTGAAATACGCGTTGATTCAAAGCCTTATCGCGGTTGAATTATGCTTCACTAACTCAGAATCATgt > 2:7544773/1‑75 (MQ=255)
aTTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCa > 1:6151331/1‑76 (MQ=255)
aTTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCa > 1:7804517/1‑76 (MQ=255)
ttGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCAc > 2:2069116/1‑76 (MQ=255)
ttGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGATCAATTACGCTTAACTACCGCCGAATCATGCAc < 1:3768284/76‑1 (MQ=255)
tGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCAcc > 1:6468277/1‑76 (MQ=255)
aaaCCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACcggc > 2:2221577/1‑76 (MQ=255)
aaaCCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACcggc > 1:7109774/1‑76 (MQ=255)
aaCCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACcggcg < 1:7927890/76‑1 (MQ=255)
ccTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGt < 2:1406455/76‑1 (MQ=255)
cTGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTa < 2:6439657/76‑1 (MQ=255)
tGACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTaa < 2:7649859/76‑1 (MQ=255)
gACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTACCTCCCGCCGAATCATGCACCGGCGGTAAg < 1:4524745/76‑1 (MQ=255)
gACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAg > 1:8499727/1‑76 (MQ=255)
gACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAg < 2:8658533/76‑1 (MQ=255)
gACATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGGAAg > 2:1008399/1‑76 (MQ=255)
aCATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGt > 1:1114143/1‑76 (MQ=255)
aCATCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGt < 2:1743590/76‑1 (MQ=255)
aTCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTg < 2:8363768/76‑1 (MQ=255)
aTCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTg > 1:4735934/1‑76 (MQ=255)
aTCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGGAAGTTg > 1:6303378/1‑76 (MQ=255)
tCCGCGTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTATCGCCGAATCATGCACCGGCGGTAAGTTgg < 2:2572684/76‑1 (MQ=255)
cgcgTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGTCt < 1:6714507/76‑1 (MQ=255)
cgcgTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCt < 2:34054/76‑1 (MQ=255)
cgcgTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCt < 2:3624044/76‑1 (MQ=255)
cgcgTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCt < 2:429869/76‑1 (MQ=255)
gcgTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTa < 1:4992658/76‑1 (MQ=255)
gcgTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTa < 2:5207036/76‑1 (MQ=255)
cgTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAg < 1:140990/76‑1 (MQ=255)
gTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAgc > 1:2718570/1‑76 (MQ=255)
gTTGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAgc < 2:1916299/76‑1 (MQ=255)
ttGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGCTGGCTAgcg > 2:9012917/1‑76 (MQ=255)
tGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAgcgc > 2:8036824/1‑76 (MQ=255)
tGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAgcgc > 2:7099135/1‑76 (MQ=255)
tGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAgcgc > 2:8180949/1‑76 (MQ=255)
tGAGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAgcgc < 1:2422368/76‑1 (MQ=255)
aGTCAAAGTCTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGccc < 2:7379806/76‑1 (MQ=255)
aGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAgc < 1:5142830/72‑1 (MQ=255)
aGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGccc > 1:2385643/1‑76 (MQ=255)
aGTCAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAAGGccc > 1:3530025/1‑76 (MQ=255)
cAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCtgt > 2:8203385/1‑76 (MQ=255)
cAAAGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCcgt > 2:5135005/1‑76 (MQ=255)
aaaGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCtgtg > 1:4000360/1‑76 (MQ=255)
aGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTATCGCCCtgcgtg > 1:1547637/1‑76 (MQ=255)
aGACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCtgtgtg < 2:4156190/76‑1 (MQ=255)
gACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGc < 2:4674799/76‑1 (MQ=255)
gACTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGc > 2:953992/1‑76 (MQ=255)
aCTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCa > 2:6090617/1‑76 (MQ=255)
aCTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCa < 1:8117383/76‑1 (MQ=255)
aCTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCa < 2:1242668/76‑1 (MQ=255)
cTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAg < 1:7854949/76‑1 (MQ=255)
cTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAg < 2:8316797/76‑1 (MQ=255)
cTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCCGTGGGCAg > 2:2436468/1‑76 (MQ=255)
cTTATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAACGCCCCGGGTGCAg > 2:553726/1‑76 (MQ=255)
ttATCGGGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGc < 2:7832531/76‑1 (MQ=255)
ttATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGGAGc > 2:2993644/1‑76 (MQ=255)
ttATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGc > 2:2763339/1‑76 (MQ=255)
ttATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGc > 2:1110660/1‑76 (MQ=255)
tATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGCt < 1:6041087/76‑1 (MQ=255)
tATCGCGGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGCt < 2:8996082/76‑1 (MQ=255)
cgcgGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGCTGaa < 2:8123308/76‑1 (MQ=255)
cgcgGTTCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGCTGaa > 2:3857161/1‑76 (MQ=255)
|
AAAATTGTACAACTTGTAGATACCGATACTATTGAAAACCTGACATCCGCGTTGAGTCAAAGACTTATCGCGGATCAATTACGCTTAACTACCGCCGAATCATGCACCGGCGGTAAGTTGGCTAGCGCCCTGTGTGCAGCTGAAGA > REL606/1592557‑1592702
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
