mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 474,743 | T→A | D188V (GAT→GTT) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| JC JC | 1,305,418 | IS150 (–) +3 bp | coding (820‑822/1461 nt) | cls ← | cardiolipin synthetase |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,329,919 | C→T | A167V (GCG→GTG) | topA → | DNA topoisomerase I |
| RA | 1,592,630 | A→T | D31V (GAT→GTT) | ydeJ → | competence damage‑inducible protein A |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 2,195,257 | (C)9→8 | coding (110/837 nt) | yeiG → | predicted esterase |
| RA | 2,539,996 | T→G | I329L (ATC→CTC) | uraA ← | uracil transporter |
| RA | 3,512,384 | G→T | intergenic (‑126/‑207) | yhhX ← / → yhhY | predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/predicted acetyltransferase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,928,260 | T→A | I15N (ATC→AAC) | rho → | transcription termination factor Rho |
| RA | 4,203,880 | Δ1 bp | coding (1122/3684 nt) | metH → | B12‑dependent methionine synthase |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 2032029–2032065 | 2052638 | 20574–20610 | 124 [113] | [119] 123 | [manB]–[wzxC] | [manB],manC,insB‑14,insA‑14,wbbD,wbbC,wzy,wbbB,wbbA,vioB,vioA,wzx,rmlC,rfbA,rfbD,rfbB,galF,wcaM,wcaL,wcaK,[wzxC] |
| * | * | ÷ | REL606 | 2052812 | 2055320–2055277 | 2466–2509 | 124 [119] | [118] 121 | [wzxC]–[cpsG] | [wzxC],wcaJ,[cpsG] |