Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A26 F1 I1 R1
|
14 |
45.0 |
2861610 |
96.8% |
2770038 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,167,668 |
T→C |
L903P (CTG→CCG) |
rpoC → |
DNA‑directed RNA polymerase subunit beta' |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,167,668 | 0 | T | C | 100.0%
| 203.0
/ NA
| 49 | L903P (CTG→CCG) | rpoC | DNA‑directed RNA polymerase subunit beta' |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (26/23); total (26/23) |
GGTTAAAGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCTGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCGGTGAACCGGG > REL606/4167597‑4167740
|
ggTTAAAGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGgcg > 2:702189/1‑76 (MQ=255)
gTTAAAGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCTCTGCTACGGTCGTGACCCGgcgc > 1:1224511/1‑76 (MQ=255)
ttAAAGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGcgcg > 1:289791/1‑76 (MQ=255)
aaaGTACGTTCTGTTGTATNTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGTTCGTGACCCGGCGCGTg > 1:1326627/1‑76 (MQ=255)
aaaGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTg > 2:1244561/1‑76 (MQ=255)
aaaGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTg < 2:1144080/76‑1 (MQ=255)
aaGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTgg > 2:29594/1‑76 (MQ=255)
aaGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTgg > 2:242573/1‑76 (MQ=255)
tACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCca < 2:595598/76‑1 (MQ=255)
aCGTTCTGTTGTNTCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCcac > 1:13164/1‑76 (MQ=255)
cGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCcaca > 1:1027662/1‑76 (MQ=255)
cGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCcaca > 1:263895/1‑76 (MQ=255)
gTTCTGTTATATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCTTGGCCAcat > 1:49094/1‑76 (MQ=255)
tCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCAcatca > 1:484748/1‑76 (MQ=255)
tgttgtATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACatcatc < 1:804988/76‑1 (MQ=255)
gttgtATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACCtcatca < 1:81856/76‑1 (MQ=255)
gttgtATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACAtcatca < 1:735280/76‑1 (MQ=255)
gttgtATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACAtcatca > 1:416251/1‑76 (MQ=255)
ttgtATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATcaa < 1:425838/76‑1 (MQ=255)
tgtATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATcaac < 1:471777/76‑1 (MQ=255)
tATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATcaacaa < 1:217630/76‑1 (MQ=255)
tCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATTATCAACAAgg < 1:1312784/76‑1 (MQ=255)
ttGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGt > 2:146737/1‑76 (MQ=255)
tgtgACACCTACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTg > 1:923307/1‑76 (MQ=255)
gtgACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGa < 1:485770/76‑1 (MQ=255)
gtgACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGa < 2:610553/76‑1 (MQ=255)
gtgACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGa < 2:1316723/76‑1 (MQ=255)
ccGNCTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCNCGTGGCCACATCATCAACAAGGGTGAAGCAAt < 2:1326627/76‑1 (MQ=255)
ccGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAAt > 1:687630/1‑76 (MQ=255)
cGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATc < 1:97995/76‑1 (MQ=255)
aCTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCgg > 2:736887/1‑76 (MQ=255)
aCTTTGGTGTATATGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCgg < 2:804187/76‑1 (MQ=255)
tgtATGTGCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATc > 2:584694/1‑76 (MQ=255)
gtgCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGc < 1:1378595/76‑1 (MQ=255)
tgCGCACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGAca > 2:607452/1‑76 (MQ=255)
cgcACTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGcaca < 1:296959/76‑1 (MQ=255)
ccTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTc < 2:687630/75‑1 (MQ=255)
cTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTcc > 2:516965/1‑76 (MQ=255)
cTGCTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTcc < 2:123936/76‑1 (MQ=255)
gCTACGGTCGTGACCCGGGGCATGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCAt < 1:1342424/76‑1 (MQ=255)
cTACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATc > 2:681584/1‑76 (MQ=255)
tACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCg > 1:588440/1‑76 (MQ=255)
tACGGTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCg > 1:584608/1‑76 (MQ=255)
gTCGTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCGGTGa > 1:404002/1‑76 (MQ=255)
gTGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCGGTGAAcc < 2:971739/76‑1 (MQ=255)
tGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATTGGTGAACCg > 1:803779/1‑76 (MQ=255)
tGACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCGGTGAACCg < 2:113435/76‑1 (MQ=255)
gACCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCGGTGAACCgg > 1:1104988/1‑76 (MQ=255)
aCCCGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCGGTGAACCggg < 2:1002166/76‑1 (MQ=255)
|
GGTTAAAGTACGTTCTGTTGTATCTTGTGACACCGACTTTGGTGTATGTGCGCACTGCTACGGTCGTGACCTGGCGCGTGGCCACATCATCAACAAGGGTGAAGCAATCGGTGTTATCGCGGCACAGTCCATCGGTGAACCGGG > REL606/4167597‑4167740
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
