Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A142 F1 I1 R1
|
21 |
42.6 |
2691336 |
96.3% |
2591756 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,488,817 |
C→T |
M130I (ATG→ATA) |
glpR ← |
DNA‑binding transcriptional repressor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,488,817 | 0 | C | T | 100.0%
| 161.5
/ NA
| 41 | M130I (ATG→ATA) | glpR | DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (18/23); total (18/23) |
TTCGCCAATGATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACCATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAAGCAGCGCGTGCGC > REL606/3488745‑3488888
|
ttCGCCAATGATCCCGCTATCGCCGCTGCGTAATTCGCCNCCGGCAAAAATGATGNGGAAATTTTGTTTTACTATc > 2:1333001/1‑76 (MQ=255)
ttCGCCAATGATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATc > 2:606100/1‑76 (MQ=255)
ttCGCCAATGATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATc > 2:440563/1‑76 (MQ=255)
ttCGCCAATGATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATc > 1:896895/1‑76 (MQ=255)
tCGCCAATGATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCa < 2:573600/76‑1 (MQ=255)
tCGCCAATGATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCa < 2:1278789/76‑1 (MQ=255)
gCCAATGATCCCGCCGTCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAAc < 1:1110898/76‑1 (MQ=255)
gATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTa < 2:996077/76‑1 (MQ=255)
aTCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAg < 1:452512/76‑1 (MQ=255)
tCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGc < 1:388978/76‑1 (MQ=255)
ccGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCaa > 2:740893/1‑76 (MQ=255)
cGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAAc < 1:852869/76‑1 (MQ=255)
gCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACa > 2:402534/1‑76 (MQ=255)
cATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACAtt < 1:915600/76‑1 (MQ=255)
cgGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGAt > 2:610094/1‑76 (MQ=255)
tGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGAttgtt < 2:1165943/76‑1 (MQ=255)
gCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGAttgttg < 1:1077486/76‑1 (MQ=255)
gCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGAttgttg < 1:1005203/76‑1 (MQ=255)
cggaaTACGCCGCCGGCGAAAATCATGCGTGAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTgg < 2:1214353/73‑1 (MQ=255)
tAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTATTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTg > 1:1118203/1‑76 (MQ=255)
aaTTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGa < 2:1126083/76‑1 (MQ=255)
aaTTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGa < 2:819887/76‑1 (MQ=255)
cGCCACCGGCGAAAATGATGTGGAAATCTTGTTTTGCTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAAt < 2:1063721/76‑1 (MQ=255)
cGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAAt < 2:243709/76‑1 (MQ=255)
ccACCGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATAc > 1:730347/1‑76 (MQ=255)
ccGGCGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCa < 1:781241/76‑1 (MQ=255)
cGAAAATGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAAtt > 1:264464/1‑76 (MQ=255)
aaaaTGCTGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGc > 1:1254687/1‑76 (MQ=255)
aaaaTGATGCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGc > 2:183596/1‑76 (MQ=255)
atgatgCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCtgt < 2:896895/76‑1 (MQ=255)
tgatgCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCtgtg > 2:882010/1‑76 (MQ=255)
atgCGGAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGAt > 1:629230/1‑76 (MQ=255)
ggAAATCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAag < 2:1005876/76‑1 (MQ=255)
aaTCTTGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAagcag < 2:68408/76‑1 (MQ=255)
ttGTTTTACTATCAACGTGTTAGCAACATTGAGTTTACTGGTGACAAGACGCAAATTGCTGTGATTAAGCAGcgcg < 2:720606/76‑1 (MQ=255)
tGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAAGCAGCGCGt > 1:355647/1‑76 (MQ=255)
tGTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAAGCAGCGCGt > 2:1041425/1‑76 (MQ=255)
gTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAAGCAGCGCGTg < 2:1149844/76‑1 (MQ=255)
gTTTTACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAAGCAGCGCGTg < 2:931680/76‑1 (MQ=255)
ttACTATCAACGTGTTTGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAAGCAGCGCGTgcgc > 2:238247/1‑76 (MQ=255)
ttACTATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTCATTAAGCAGCGCGTgcgc > 2:1177871/1‑76 (MQ=255)
|
TTCGCCAATGATCCCGCCATCGCGGCTGCGTAATTCGCCACCGGCGAAAATGATGCGGAAATCTTGTTTTACCATCAACGTGTTAGCAACATTGAGATTGTTGGTGACAATACGCAAATTGCTGTGATTAAGCAGCGCGTGCGC > REL606/3488745‑3488888
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
