mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 86,384 | C→A | intergenic (‑51/+42) | leuA ← / ← leuL | 2‑isopropylmalate synthase/leu operon leader peptide |
| RA | 433,711 | T→G | I69S (ATC→AGC) | hupB → | HU, DNA‑binding transcriptional regulator, beta subunit |
| RA | 474,520 | Δ1 bp | coding (786/1677 nt) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 648,276 | G→A | R208C (CGC→TGC) | mrdB ← | cell wall shape‑determining protein |
| RA | 1,080,405 | A→G | Y27C (TAC→TGC) | yccE → | hypothetical protein |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,658,770 | T→G | N200K (AAT→AAG) | ydgB → | short chain dehydrogenase |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 3,027,586 | C→T | A29T (GCC→ACC) | ECB_02827 ← | Polysialic acid transport ATP‑binding KpsT |
| RA | 3,096,436 | C→T | A136T (GCA→ACA) | sufI ← | repressor protein for FtsI |
| RA | 3,145,823 | G→A | intergenic (+154/‑41) | dnaG → / → rpoD | DNA primase/RNA polymerase sigma factor |
| RA | 3,488,817 | C→T | M130I (ATG→ATA) | glpR ← | DNA‑binding transcriptional repressor |
| RA | 3,535,089 | (A)6→5 | coding (9/597 nt) | yhhF → | predicted methyltransferase |
| MC JC | 3,619,789 | (GAC)4→3 | coding (2309‑2311/2340 nt) | yhjN ← | regulator of cellulose synthase, cyclic di‑GMP binding |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| RA | 3,893,551 | +G | intergenic (+6/‑50) | kup → / → insJ‑5 | potassium transporter/IS150 hypothetical protein |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 4,162,569 | A→C | I572L (ATC→CTC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546989–547700 | 593383 | 45684–46395 | 14 [12] | [11] 13 | [insB‑6]–[fepA] | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,ECB_00513,ECB_00514,ECB_00515,ECB_00516,ECB_00517,appY,ompT,envY,ybcH,nfrA,nfrB,nfrB,ECB_00524,yhhI,ECB_00526,ECB_00527,ECB_00528,ECB_00529,ECB_00530,cusS,cusR,cusC,ylcC,cusB,cusA,pheP,ybdG,nfnB,ybdF,ybdJ,ybdK,insJ‑1,insK‑1,insB‑7,insA‑7,insK‑1,hokE,insL‑3,entD,[fepA] |
| * | * | ÷ | REL606 | 593551 | 619828–619116 | 25566–26278 | 13 [12] | [11] 14 | [fepA]–[insA‑8] | [fepA],fes,ybdZ,entF,fepE,fepC,fepG,fepD,ybdA,fepB,entC,entE,entB,entA,ybdB,cstA,cstA,ybdD,ybdH,ybdL,ybdM,ybdN,insB‑8,[insA‑8] |