Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A80 F1 I1 R1
|
17 |
48.4 |
3161007 |
95.9% |
3031405 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,202,619 |
Δ1 bp |
intergenic (‑60/‑140) |
iclR ← / → metH |
DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,202,618 | 0 | A | . | 100.0%
| 285.4
/ NA
| 57 | intergenic (‑59/‑141) | iclR/metH | DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (34/23); total (34/23) |
GGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCAC > REL606/4202549‑4202689
|
ggTGCGACCATGACGTTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTg < 1:258263/76‑1 (MQ=255)
ggTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTg < 2:1247917/76‑1 (MQ=255)
gACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGaa > 2:907931/1‑76 (MQ=255)
gACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGaa > 1:197679/1‑76 (MQ=255)
aTGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGa > 2:87096/1‑76 (MQ=255)
taCAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATc > 2:322617/2‑76 (MQ=255)
aCAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATcc > 2:509651/1‑76 (MQ=255)
aGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGa < 2:1164184/76‑1 (MQ=255)
aGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGa > 2:531655/1‑76 (MQ=255)
aGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGa > 1:1343086/1‑76 (MQ=255)
aGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGa > 2:565678/1‑76 (MQ=255)
gTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGAt < 2:1214786/76‑1 (MQ=255)
gTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGAt < 2:1525065/76‑1 (MQ=255)
tctcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATg < 2:595840/76‑1 (MQ=255)
tctcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATg < 1:23939/76‑1 (MQ=255)
ctcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGa > 2:232386/1‑76 (MQ=255)
ctcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGa < 2:1196950/76‑1 (MQ=255)
tcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAg < 2:335238/76‑1 (MQ=255)
tcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAg < 1:968075/76‑1 (MQ=255)
tcCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAg < 2:158843/76‑1 (MQ=255)
ccTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTACTGC‑ATAGTTGCTGAACTGATCCGATGAGt > 1:410845/1‑76 (MQ=255)
ccTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGt > 2:1284301/1‑76 (MQ=255)
ccTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGt > 2:357199/1‑76 (MQ=255)
ccTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGt > 1:777045/1‑76 (MQ=255)
ccTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGt > 2:735070/1‑76 (MQ=255)
cTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGtt > 1:870481/1‑76 (MQ=255)
cTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGtt < 2:1347371/76‑1 (MQ=255)
cTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGtt < 2:1484872/76‑1 (MQ=255)
cTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGtt < 2:1406002/76‑1 (MQ=255)
ttttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTaa < 1:181573/76‑1 (MQ=255)
ttttCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTaa > 1:803420/1‑76 (MQ=255)
cTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGtt > 1:963682/1‑76 (MQ=255)
tCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACa < 1:1115498/76‑1 (MQ=255)
aaTCATTTTCATTTTTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCa > 1:1007611/1‑76 (MQ=255)
ttcattttTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCg > 1:113840/1‑76 (MQ=255)
tcattttTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgt > 1:659599/1‑76 (MQ=255)
cattttTATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgtg < 2:898158/76‑1 (MQ=255)
tttttATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgtggt < 1:763007/76‑1 (MQ=255)
tttttATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgtggt > 1:212623/1‑76 (MQ=255)
tttttATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgtggt < 1:18238/76‑1 (MQ=255)
ttttATTGTTAGCTAATGC‑ATAGTTGCTGAACTGACCCGATGAGTTAATGTTGAACAAATCTCATGTTGCgtggtg > 1:1545881/1‑76 (MQ=255)
ttATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTggtggt > 2:283161/1‑76 (MQ=255)
ttATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTggtggt < 1:1055023/76‑1 (MQ=255)
ttATTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTggtggt > 2:1390911/1‑76 (MQ=255)
aTTGTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCg > 1:1095487/1‑76 (MQ=255)
gTTAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCtt < 2:101515/76‑1 (MQ=255)
tAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCtttt > 1:58727/1‑76 (MQ=255)
tAGCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCtttt > 1:206948/1‑76 (MQ=255)
gCTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTAc > 2:1521815/1‑76 (MQ=255)
cTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTAcc > 2:1019677/1‑76 (MQ=255)
cTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTAcc > 1:148557/1‑76 (MQ=255)
cTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTAcc < 1:1208697/76‑1 (MQ=255)
cTAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTAcc > 1:1123685/1‑76 (MQ=255)
tAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACca > 1:962816/1‑76 (MQ=255)
tAATGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACca > 1:1306980/1‑76 (MQ=255)
aaTGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACcac < 2:328135/76‑1 (MQ=255)
aaTGC‑ATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACcac > 2:736438/1‑76 (MQ=255)
|
GGTGCGACCATGACAGTCTCCTTTTTCTGTATCGTGGAAATCATTTTCATTTTTATTGTTAGCTAATGCAATAGTTGCTGAACTGATCCGATGAGTTAATGTTGAACAAATCTCATGTTGCGTGGTGGTCGCTTTTACCAC > REL606/4202549‑4202689
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
