Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A45 F1 I1 R1
|
14 |
53.1 |
3307936 |
97.7% |
3231853 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
4,202,621 |
Δ579 bp |
|
[metH] |
[metH] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
4202621 |
4203199 |
579 |
44 [1] |
[1] 43 |
[metH] |
[metH] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4202620 | 1 (0.020) | 42 (0.790) |
38/150 |
0.4 |
97.7% |
intergenic (‑61/‑139) |
iclR/metH |
DNA‑binding transcriptional repressor/B12‑dependent methionine synthase |
| ? | REL606 |
4203200 = |
1 (0.020) | coding (442/3684 nt) |
metH |
B12‑dependent methionine synthase |
GATK/CNVnator alignment
N/A
