Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F1 I1 R1
|
16 |
43.9 |
3070277 |
96.2% |
2953606 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,028,170 |
G→A |
R98* (CGA→TGA) |
ECB_02828 ← |
Polysialic acid transport protein kpsM |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,028,170 | 0 | G | A | 100.0%
| 198.7
/ NA
| 52 | R98* (CGA→TGA) | ECB_02828 | Polysialic acid transport protein kpsM |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (27/25); total (27/25) |
TATAAACAGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCGATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGATAA > REL606/3028098‑3028238
|
tataAACAGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATa < 1:798404/76‑1 (MQ=255)
taAACAGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGCTCGTATCGATGGGTTTTACTGGTCaataat < 1:1391481/76‑1 (MQ=255)
taAACAGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCaataat < 1:557891/76‑1 (MQ=255)
taAACAGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCaataat < 2:582562/76‑1 (MQ=255)
taAACACCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGTTCGTATCGATGGGTTTTACTGGTCaataat < 1:1403264/76‑1 (MQ=255)
aaCAGCAACGTAAATCAGTGTCTCGAGCGGTNCGCGTGCACTGATCNTATCGNTGGGTTTTACTGGGCAATAATTa < 2:201188/76‑1 (MQ=255)
cAGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTaaa < 1:610082/76‑1 (MQ=255)
cAGCAACGTAAATCAGTGTCGCNNGCAGTGCGCGNNCAATGATCGTATCGTTGGGTTTTACTGGTCAATAATTaaa < 1:1378528/76‑1 (MQ=255)
aGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAaac > 1:153988/1‑76 (MQ=255)
aGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAaac > 1:154010/1‑76 (MQ=255)
cAACGTAAGTCAGTTTCTCAAGCAGGGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAaacaa < 2:315201/76‑1 (MQ=255)
cAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAaacaa < 2:1083235/76‑1 (MQ=255)
cAACGTAAAGCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAaacaa < 1:49913/76‑1 (MQ=255)
aaCGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAaacaac < 2:830983/76‑1 (MQ=255)
tAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCt > 2:839409/1‑76 (MQ=255)
aaaTCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTg > 2:578055/1‑76 (MQ=255)
aaaTCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTg > 2:1495775/1‑76 (MQ=255)
aaaTCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTCACTGGTCAATAATTAAACAACCCCTg < 1:305171/76‑1 (MQ=255)
aTCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGAt < 1:465723/76‑1 (MQ=255)
tCAGTGTCTTAAGCAGTGCGCGTNCAATGNTCGTAGCGATGGGTNTTCCTGCTCAATAATTAAACAACCCCTGAtt > 2:206174/1‑76 (MQ=255)
tCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGAtt > 1:947028/1‑76 (MQ=255)
aGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTCCTGGTCAATAATTAAACAACCCCTGATTCg > 1:1152572/1‑76 (MQ=255)
gtCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCtt < 2:1361829/76‑1 (MQ=255)
tctcAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATCCCCTTc < 1:94688/76‑1 (MQ=255)
ctcAAGCAGTGCGCGTGTAATGAGCGTATCGATGGGTTTTACTGGTGAATAATTAAACAACCCCTGATACGCTTCa > 1:81955/1‑76 (MQ=255)
ctcAAGCAGCGCGCGTGCAATGATCGTATCGATTGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCa > 2:1310611/1‑76 (MQ=255)
cAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAAt > 1:373112/1‑76 (MQ=255)
cAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAAt < 2:121083/76‑1 (MQ=255)
cAAGCAGTGCGCGTGCAATGATCGTATCGATGGGGTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAAt > 1:373117/1‑76 (MQ=255)
aaGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATa > 2:1142848/1‑76 (MQ=255)
gCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGc < 1:438537/76‑1 (MQ=255)
gcgcGTGCAATGATNGTATCGATTGGTTTTACTGNTCAATCATNAAACAACCCCTGATTCGCTTCAATAGCACCTa < 2:1271630/76‑1 (MQ=255)
gcgcGTGCAATGATNGTATCGATGGGTTGTACTGNTCAATCATNAAACAACCCCTGATTCGCTCCAATAGCACCTa < 2:1271627/76‑1 (MQ=255)
cgTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAg < 2:1410093/76‑1 (MQ=255)
gTGCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGa < 1:1068786/76‑1 (MQ=255)
gCAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAAc > 2:700897/1‑76 (MQ=255)
cAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACg > 1:927257/1‑76 (MQ=255)
cAATGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACg > 2:1162908/1‑76 (MQ=255)
aTGATCGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGATTCAATAGCCCCTACAGAACGAt > 1:1315013/1‑76 (MQ=255)
cGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTg > 1:551942/1‑76 (MQ=255)
cGTATCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTg < 2:394317/76‑1 (MQ=255)
aTCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATa < 2:464272/76‑1 (MQ=255)
aTCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATa > 2:770074/1‑76 (MQ=255)
tCGATGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATAc < 2:633080/76‑1 (MQ=255)
gATCGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTg > 2:563490/1‑76 (MQ=255)
aTGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGc < 2:723862/76‑1 (MQ=255)
tGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCt < 1:991029/76‑1 (MQ=255)
tGGGTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCt > 1:1335166/1‑76 (MQ=255)
ggTTTTACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGNTACTGCTaa < 1:39564/76‑1 (MQ=255)
ntttACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGNTGATACTGCTAAAg > 2:217297/2‑76 (MQ=255)
tttACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGa > 1:889497/1‑76 (MQ=255)
ttACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGAt > 2:328019/1‑76 (MQ=255)
ttACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGAt > 1:737286/1‑76 (MQ=255)
tACTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGATa > 1:1474625/1‑76 (MQ=255)
tACTGGTCAAGAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGATa > 1:1417100/1‑76 (MQ=255)
aCTGGTCAATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGATaa < 2:843897/76‑1 (MQ=255)
|
TATAAACAGCAACGTAAATCAGTGTCTCAAGCAGTGCGCGTGCAATGATCGTATCGATGGGTTTTACTGGTCGATAATTAAACAACCCCTGATTCGCTTCAATAGCACCTACAGAACGATTGCTGATACTGCTAAAGATAA > REL606/3028098‑3028238
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
