Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A120 F1 I1 R1
|
20 |
248.8 |
16334864 |
93.0% |
15191423 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
1,988,481 |
IS150 (–) +3 bp |
coding (5620‑5622/7152 nt) |
yeeJ → |
adhesin |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 666130 | NA (NA) | 275 (1.120) |
105/150 |
0.3 |
99.6% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 1988483 |
1 (0.000) | coding (5622/7152 nt) |
yeeJ |
adhesin |
| * |
? |
REL606 |
1988481 = | 1 (0.000) | 313 (1.310) |
123/146 |
0.0 |
99.7% |
coding (5620/7152 nt) |
yeeJ |
adhesin |
| ? | REL606 |
= 2775877 |
NA (NA) | noncoding (1/1443 nt) |
IS150 |
repeat region |
Only 100 of 275 total aligned reads displayed.
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/666057‑666130
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTGACCTCGGC < REL606/1988483‑1988409
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAA < 2:4559957/76‑1
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAG < 2:678072/76‑1
GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGT < 1:349458/76‑1
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTG > 2:5029221/1‑76
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTG < 2:6661859/76‑1
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGACAGTACAAAGTG > 2:8070544/1‑76
CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGA > 1:3188430/1‑76
CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGC > 2:7802087/1‑76
CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGC > 2:6157663/1‑76
AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCT > 1:5848006/1‑76
TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCA < 1:7045507/76‑1
TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCA < 1:4240096/76‑1
TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCA > 2:6027758/1‑76
TGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCA < 2:4498001/76‑1
GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCAT < 1:4997827/76‑1
GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCAT < 1:1790995/76‑1
AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATT > 1:6259733/1‑76
AATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATT > 2:1373876/1‑76
ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTC < 1:3422591/76‑1
ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTC > 2:7365039/1‑76
ATATCAGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTC > 1:3625892/1‑76
TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCG < 2:3533711/76‑1
TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCG < 2:1436703/76‑1
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGG < 1:4766528/76‑1
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGG > 1:7483483/1‑76
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGG < 1:5939753/76‑1
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGG > 1:8073222/1‑76
ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGG > 1:5396924/1‑76
GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGG > 1:7247272/1‑76
GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGG < 2:5399150/76‑1
AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGG < 1:7488552/76‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGgt > 1:6549338/1‑74
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGAT < 1:5742322/76‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGAT < 1:5259187/76‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGAT < 1:1458628/76‑1
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGAT < 2:206220/76‑1
TCAGACCTATATGCCTCGTGTTTAACTATCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGAT < 2:5485696/76‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATG > 2:4039128/1‑76
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATG < 1:2641544/76‑1
AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGC > 1:4826083/1‑76
AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGC > 1:2164017/1‑76
AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGC < 2:2699459/76‑1
CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTC < 2:929497/76‑1
CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTC < 2:3451218/76‑1
TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTtc > 1:7410226/1‑74
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTTAC > 1:3696481/1‑76
TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACa < 2:469513/76‑2
TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACC < 1:3973108/76‑1
ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCA < 2:6506654/76‑1
ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCA < 1:11921/76‑1
TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGGTTTCACCAT > 1:2727509/1‑76
TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGCTTTCACCAT > 1:5583460/1‑76
TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCAT < 2:7569949/76‑1
GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATA < 1:7076622/76‑1
GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATA < 2:3077282/76‑1
CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGCTTTCACCCTAT > 2:194483/1‑76
CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATAT < 1:6910314/76‑1
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTTACCATATA > 2:1578128/1‑76
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATA > 2:3809996/1‑76
CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATA < 1:1613546/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGCTTTCAACATATACG > 1:5083420/1‑76
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACG < 1:5187603/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACG < 2:4216678/76‑1
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACG < 1:1988266/76‑1
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGA < 2:482393/76‑1
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGCTTTCACCATATACGAA > 2:4469212/1‑76
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAA > 2:7971331/1‑76
GTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAAC > 2:7223201/1‑76
GTTTAACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATAAGAAC > 1:4610804/1‑76
AACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCCCCATATACTAACCGgt > 1:7712117/1‑74
AACTGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTT > 2:6325519/1‑76
TGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGTTTTCACCATATACGAACCGCTTCT > 1:8137483/1‑76
TGTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCT > 2:5621052/1‑76
GTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTT > 2:2582594/1‑76
GTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTT > 1:677956/1‑76
GTCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTT < 1:4469212/76‑1
TCCAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTT < 2:5869615/76‑1
CAACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCa < 2:4415816/76‑2
AACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGCGGTTTCACCAAAGACGAACCATTTCTTTCGG > 1:215301/1‑76
AACTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGG < 1:6040561/76‑1
CTTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGC < 1:175825/76‑1
TTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGGGCTTTCCCCATATACGAACCGTTTCTTTCAGGCG > 2:1770850/1‑76
TTTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCG < 2:3633798/76‑1
TTTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGT < 2:1063275/76‑1
TTTGGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGCTTTTACCATATACGAAACGTTTTTTTCGGGCGTC > 2:3301416/1‑76
GGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGGTGCTTTCACCATATACGAACCGTTTCTTTCGGGCGGCATG > 2:520237/1‑76
GGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATG > 1:512577/1‑76
GGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATG < 1:6573772/76‑1
GGGGTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATG > 2:2374457/1‑76
GTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGTCGTCATGGTG < 2:1256435/76‑1
GTCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTG > 1:1014718/1‑76
TCAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTGA < 2:7890934/76‑1
CAGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTGAC < 1:7556057/76‑1
AGTACAAAGTGAGGCTCCATTCGGCAGGGGGGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGGGACC > 2:599887/1‑76
AGTACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGGTTCTTTCGGGCGTCATGGTGACC > 2:3144736/1‑76
TACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTGACCTC < 1:2120089/76‑1
TACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTGACCTC < 2:2286484/76‑1
TACAAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTGACCTC > 2:1929948/1‑76
ACAAAGTGAGGCTCCATTCGGCAGGGGTGGTTTCACCATATACGCACCGTTTCTTTCGGGCGTCATGGTGACCTCG > 1:249751/1‑76
AAAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCCTATACGAAACGTTTCTTTCGGGCGTCATGGTGACCTCGGC > 2:6895864/1‑76
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/666057‑666130
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AAGTGAGGCTCCATTCGGCAGGGATGCTTTCACCATATACGAACCGTTTCTTTCGGGCGTCATGGTGACCTCGGC < REL606/1988483‑1988409
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
