mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 649,731 | C→A | W357C (TGG→TGT) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 762,305 | C→G | intergenic (+77/‑56) | lysZ → / → lysQ | tRNA‑Lys/tRNA‑Lys |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| RA | 1,332,157 | A→G | intergenic (+140/‑70) | topA → / → cysB | DNA topoisomerase I/DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| JC JC | 1,988,481 | IS150 (–) +3 bp | coding (5620‑5622/7152 nt) | yeeJ → | adhesin |
| RA | 2,131,466 | (A)9→8 | intergenic (‑125/+175) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| JC JC | 2,448,488 | IS4 (+) +14 bp | intergenic (+19/+18) | nupC → / ← yfeA | nucleoside (except guanosine) transporter/predicted diguanylate cyclase |
| JC JC | 3,015,254 | IS150 (+) +3 bp | coding (675‑677/1677 nt) | ECB_02816 → | KpsD protein |
| JC JC | 3,103,274 | IS150 (–) +3 bp | coding (128‑130/483 nt) | ygiV ← | predicted transcriptional regulator |
| JC | 3,147,777 | Δ3 bp | intergenic (+72/+5) | rpoD → / ← ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| MC JC | 3,228,601 | Δ557 bp | [yraM] | [yraM] | |
| RA | 3,338,855 | G→A | G229R (GGA→AGA) | yhdG → | tRNA‑dihydrouridine synthase B |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 3,911,972 | (T)7→8 | intergenic (‑173/‑150) | yifB ← / → ilvL | predicted bifunctional enzyme and transcriptional regulator/ilvG operon leader peptide |
| RA | 4,163,133 | A→C | N760H (AAC→CAC) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |