Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A120 F1 I1 R1
|
20 |
248.8 |
16334864 |
93.0% |
15191423 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,015,254 |
IS150 (+) +3 bp |
coding (675‑677/1677 nt) |
ECB_02816 → |
KpsD protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
2774435 = | NA (NA) | 314 (1.300) |
120/148 |
0.0 |
100% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3015254 = |
0 (0.000) | coding (675/1677 nt) |
ECB_02816 |
KpsD protein |
| * |
? |
REL606 |
= 2775877 | NA (NA) | 340 (1.390) |
109/150 |
0.2 |
100% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
= 3015256 |
0 (0.000) | coding (677/1677 nt) |
ECB_02816 |
KpsD protein |
Only 100 of 366 total aligned reads displayed.
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774510‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCAGCA > REL606/3015254‑3015328
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 1:1172900/1‑76
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 2:5925876/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA > 2:2835742/1‑76
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 2:2340982/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:798818/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:7430713/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:4757986/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:3897182/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2965638/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA < 1:2094842/76‑1
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTCTTTGGGGTCAGTACA < 1:276028/76‑1
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:2325614/76‑1
TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAC < 1:6801787/76‑1
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTACTTGTACAACTTTTTGGGGTCAGTACACg > 2:6857128/1‑75
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACT > 2:539503/1‑76
CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACT > 1:6638432/1‑76
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTT < 1:5424263/76‑1
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTT > 1:5957382/1‑76
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTT < 2:2276428/76‑1
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTT < 2:4053302/76‑1
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTT > 2:750401/1‑76
TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTT < 2:5497441/76‑1
GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTC > 1:6696322/1‑76
GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTC > 1:6896238/1‑76
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCC > 2:6714659/1‑76
ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCC > 2:6432660/1‑76
CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCT > 1:5574468/1‑76
CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCT > 2:5704309/1‑76
CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCT > 1:1757714/1‑76
TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTG < 2:6210970/76‑1
CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGC > 1:2480512/1‑76
AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTG < 2:5620605/76‑1
ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGA > 1:977852/1‑76
GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACG > 1:6320869/1‑76
GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACG < 1:4680693/76‑1
GAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACG < 1:3337003/76‑1
ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGC > 2:4637959/1‑76
TATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCA > 2:788829/1‑76
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAAC > 1:7912509/1‑76
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAAC > 1:6505572/1‑76
CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAAC > 1:5639995/1‑76
GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACT < 2:5841479/76‑1
GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTG > 2:3121787/1‑76
TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGG < 1:4455616/76‑1
CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGC < 1:3634113/76‑1
AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCT < 2:5200727/76‑1
AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCT > 1:2661644/1‑76
TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGC < 2:5090927/76‑1
TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGC > 1:5356695/1‑76
TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGC > 1:4315995/1‑76
ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCA > 2:3402574/1‑76
ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGT > 2:3038687/1‑76
ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGT > 1:7491820/1‑76
ATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGT > 1:4081703/1‑76
TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTT > 1:6259317/1‑76
GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTC > 1:2190292/1‑76
GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTC > 1:5081377/1‑76
GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTC < 2:1562844/76‑1
GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTC > 1:6581334/1‑76
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCC > 2:708676/1‑76
TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCC > 1:5918524/1‑76
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGTCTTTCGCAGTTCGCag > 2:7360794/1‑74
CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCG < 2:2116868/76‑1
GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGA > 1:6972693/1‑76
TGTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGAT < 2:6523245/76‑1
GTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATG > 1:4267507/1‑76
GTTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATG < 2:1073524/76‑1
TTTAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGG > 2:4997007/1‑76
TAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTG < 1:1057218/76‑1
TAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTG < 1:1284658/76‑1
TAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTG < 2:1420396/76‑1
TAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTG < 1:5208554/76‑1
TAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTG < 2:3891795/76‑1
TAACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTG < 1:6110698/76‑1
AACTGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGA < 1:7315845/76‑1
TGTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACAC > 1:7349202/1‑76
GTCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACC < 1:3836360/76‑1
TCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCA > 2:4405566/1‑76
TCCAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCA < 2:1870627/76‑1
CAACTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATC < 2:1277413/76‑1
CTTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATC > 1:1357531/1‑76
TTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCG > 1:7755219/1‑76
TTTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCG > 2:379830/1‑76
TTTTGGGGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGT > 2:732036/1‑76
GGTCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCC > 1:7303901/1‑76
TCAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGC > 1:4504583/1‑76
CAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCG > 2:2643596/1‑76
CAGTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCG > 1:4893401/1‑76
GTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTC < 1:5295388/76‑1
GTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTC < 2:1684140/76‑1
GTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTC > 1:1984654/1‑76
GTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTC < 2:7605968/76‑1
GTACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTC < 2:3691356/76‑1
TACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCA < 1:1416249/76‑1
TACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCA > 1:2523088/1‑76
ACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCAG < 2:6016735/76‑1
ACACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCAG > 1:1612044/1‑76
CACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCAGC < 2:7219120/76‑1
ACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCAGCA > 2:5331204/1‑76
ACTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCAGCA > 2:819264/1‑76
GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/2774510‑2774435
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCTTCCTGCTGAACGGCAAACTGGGGCTTTCGCAGTTCGCCGATGGTGACACCATCATCGTCGGGCCGCGTCAGCA > REL606/3015254‑3015328
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
