Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A18 F1 I1 R1
|
18 |
50.6 |
3235256 |
96.4% |
3118786 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
4,096,818 |
(AGTTTGC)1→2 |
coding (755/846 nt) |
glpF ← |
glycerol facilitator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
4096811 = | 7 (0.140) | 39 (0.780) |
33/148 |
0.5 |
86.8% |
coding (762/846 nt) |
glpF |
glycerol facilitator |
| ? | REL606 |
= 4096817 |
5 (0.100) | coding (756/846 nt) |
glpF |
glycerol facilitator |
TCCTTACTTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4096883‑4096811
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAAGAAAAGGAAACCACAACTCCTTCAGAAC < REL606/4096817‑4096744
TCCTTACTTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAA < 1:221704/76‑1
CCTTACTTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAA < 1:308809/76‑1
TTACTTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGCGCATTTGCCTACCGCAAACTGCAAACT > 1:584833/1‑76
TTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATT > 2:1182009/1‑76
TTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATT > 2:117664/1‑76
TTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATT > 2:188197/1‑76
TCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTG < 1:832004/76‑1
GGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCG < 2:1258359/76‑1
TGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCC > 2:547008/1‑76
CCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCAT < 2:763783/76‑1
GCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTT < 2:398361/76‑1
ctgTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTGCCGCAAACTGCAAACTGATTGGTCGCCATTTG < 2:1122155/73‑1
CTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTG < 1:1250915/76‑1
TTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGC < 2:374975/76‑1
TTTTGGCCCTATCGTTGGCGTGCTTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCC > 1:5820/1‑76
TTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCC > 1:1098705/1‑76
TTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCT < 1:823079/76‑1
TTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCT > 1:815170/1‑76
TTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTT > 1:453096/1‑76
TGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTG > 2:891998/1‑76
TGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTG > 2:988864/1‑76
TGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTG < 2:1400540/76‑1
TATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATAT < 2:873157/76‑1
ATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCTCGTACTGCAAACNGACTGGTCGCCATTTGCCTTGCGATATC > 1:136536/1‑76
CGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTG < 2:190961/76‑1
CGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTG > 2:1009578/1‑76
GTTGGCGCGATTGTAGGTGCTTTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGT > 1:1147672/1‑76
TTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTG < 1:688713/76‑1
TTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTG > 1:385864/1‑76
CGCGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGT > 1:1184045/1‑76
CGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGG > 1:1352198/1‑76
CGATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGACGCCATTTGCCTTGCGATATCTGTGTTGTGG > 2:253312/1‑76
ATTGTAGGTGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAA > 2:421382/1‑76
TGCATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGANGAAAAGGA > 1:1419877/1‑76
CATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAAGAAAAGGAAA < 1:950106/76‑1
ATTTGCCTACCGCAAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAAGAAAAGGAAAC < 2:1087906/76‑1
AAACTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAAGAAAAGGAAACCACAACTCCTTCA > 1:234065/1‑76
CTGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAAGAAAAGGAAACCACAACTCCTTCAGAA < 2:592303/76‑1
TGCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAAGAAAAGGAAACCACAACTCCTTCAGAAC < 1:900190/76‑1
TCCTTACTTCCTGGTGCCGCTTTTTGGCCCTATCGTTGGCGCGATTGTAGGTGCATTTGCCTACCGCAAACTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/4096883‑4096811
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gCAAACTGATTGGTCGCCATTTGCCTTGCGATATCTGTGTTGTGGAAGAAAAGGAAACCACAACTCCTTCAGAAC < REL606/4096817‑4096744
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
