Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A73 F1 I1 R1
|
21 |
62.0 |
3993596 |
96.1% |
3837845 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
4,134,769 |
Δ3 bp |
intergenic (‑61/‑91) |
argE ← / → argC |
acetylornithine deacetylase/N‑acetyl‑gamma‑glutamyl‑phosphate reductase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 4134768 | 7 (0.110) | 73 (1.180) |
52/150 |
0.1 |
91.8% |
intergenic (‑60/‑94) |
argE/argC |
acetylornithine deacetylase/N‑acetyl‑gamma‑glutamyl‑phosphate reductase |
| ? | REL606 |
4134772 = |
6 (0.100) | intergenic (‑64/‑90) |
argE/argC |
acetylornithine deacetylase/N‑acetyl‑gamma‑glutamyl‑phosphate reductase |
TTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4134697‑4134768
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGA > REL606/4134772‑4134846
TTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAAC > 1:1438628/1‑76
TTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACG < 1:1422292/76‑1
TGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGT > 1:80172/1‑76
TTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTG < 1:1639394/76‑1
TTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTG < 1:617602/76‑1
TTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTG > 1:293631/1‑76
TTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGA < 1:1144604/76‑1
TTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAG < 1:748722/76‑1
TTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGC > 2:1497434/1‑76
CATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGT > 1:477330/1‑76
CATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGT < 1:1766907/76‑1
CATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGT > 1:275971/1‑76
CATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGT > 1:301569/1‑76
ATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTA > 1:1376599/1‑76
TTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAA < 1:335639/76‑1
TTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAA < 1:429465/76‑1
TTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAA < 1:1390/76‑1
TTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAA > 2:75044/1‑76
GTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATA < 1:1101254/76‑1
TGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAA > 1:907928/1‑76
GACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAA > 1:643740/1‑76
ACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAAC > 2:815485/1‑76
CACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACC < 1:118760/76‑1
ACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCC > 1:1907101/1‑76
ACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCC > 1:1067767/1‑76
CTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCA < 1:1956965/76‑1
TCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAG < 2:623776/76‑1
CTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGC > 1:250065/1‑76
TGGTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCC < 1:1416440/76‑1
GTCATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGT > 2:320827/1‑76
CATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAA < 2:645072/76‑1
CATGATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAA > 1:388369/1‑76
ATAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTG > 1:829617/1‑76
TAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGA > 1:788739/1‑76
TAGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGA > 1:788743/1‑76
AGTATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAA > 2:1199298/1‑76
ATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGT > 1:1637385/1‑76
ATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGT < 2:1302450/76‑1
ATCAATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGT > 2:1099917/1‑76
AATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTT < 2:1035717/76‑1
AATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTT > 2:1803159/1‑76
AATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTT < 2:1273686/76‑1
AATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTT < 1:824720/76‑1
ATATTCATTCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTA < 2:114622/76‑1
ATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCCCCAGCCGTAAGGTGAATGTTTTA < 1:1355883/76‑1
ATATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTA < 2:1485962/76‑1
TATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTAC > 1:16479/1‑76
TATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTAC > 2:32124/1‑76
TATTCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTAC > 1:940424/1‑76
TCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTT < 1:1497434/76‑1
TCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTT < 2:434812/76‑1
TCATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTT > 2:1684534/1‑76
ATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTA > 1:1420459/1‑76
ATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTA > 1:1420442/1‑76
ATGCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGCTTA > 1:1420456/1‑76
GCAGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAAC < 2:173629/76‑1
AGTATTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAACCCCCCCAGCCGTAAGGTGAATGTTTTACGTTTAACCT < 2:491004/76‑1
TTTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCA > 1:3642/1‑76
TTATGAAT‑AAAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAA < 2:618444/76‑1
TTATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAA > 1:1478063/1‑76
TATGAAT‑AAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAAC < 2:1818221/76‑1
ATGAAT‑AAAATCTAACGTTGAGCGTAAAAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACC < 2:424763/76‑1
aatAAAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGA < 1:389943/73‑1
tAAAATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAGCCAGACA < 1:279355/75‑1
AAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATA < 1:523742/76‑1
AAATCTAACGTTGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATA < 2:907458/76‑1
AATCTAACGTGGAGCGTAATAAACCCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAA < 2:1803823/76‑1
ATCTAACGTTGAGCGTAATAAAACCCCCCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAG < 2:1719422/76‑1
ATCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAG > 1:1776139/1‑76
TCTAACGTTGAGCGTAATAAACCCCCCCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGA < 1:922669/76‑1
TCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGA > 1:688043/1‑76
TCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGA > 1:409807/1‑76
TCTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGA > 1:1597733/1‑76
TTTGTTTTTCATTGTTGACACACCTCTGGTCATGATAGTATCAATATTCATGCAGTATTTATGAATAAAAAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/4134697‑4134768
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTAACGTTGAGCGTAATAAAACCCACCAGCCGTAAGGTGAATGTTTTACGTTTAACCTGGCAACCAGACATAAGA > REL606/4134772‑4134846
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
