Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A35 F1 I1 R1
|
21 |
46.3 |
3071142 |
93.0% |
2856162 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
2,140,926 |
T→G |
E107A (GAA→GCA) |
ECB_02035 ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 2,140,926 | 0 | T | G | 100.0%
| 159.2
/ NA
| 39 | E107A (GAA→GCA) | ECB_02035 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (12/27); total (12/27) |
ATCACAGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTTCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGTTCTTCACTAACAACTTGCACCCA > REL606/2140857‑2140996
|
aTCACAGCTTCTTCTATAACATTGGTCATTGTCGGCGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGgtg < 2:326737/76‑1 (MQ=255)
caGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGtata > 2:1127977/1‑76 (MQ=255)
caGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGtata > 2:609207/1‑76 (MQ=255)
caGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGtata > 2:658936/1‑76 (MQ=255)
caGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGtata > 2:814792/1‑76 (MQ=255)
caGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGtata > 2:824146/1‑76 (MQ=255)
caGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGtata < 2:505493/76‑1 (MQ=255)
gCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACg < 1:617869/76‑1 (MQ=255)
gCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACg < 1:617884/76‑1 (MQ=255)
ttcttcTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGt < 2:1052700/76‑1 (MQ=255)
ttctATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAgg < 1:986034/76‑1 (MQ=255)
tataACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTGTACGGTAGGACa < 1:1201876/76‑1 (MQ=255)
ataACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGGCaa > 1:588160/1‑76 (MQ=255)
ataACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACaa > 1:423255/1‑76 (MQ=255)
aaCATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAata > 2:751266/1‑76 (MQ=255)
aaCATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAata < 1:40660/76‑1 (MQ=255)
cATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAAtata < 1:977239/76‑1 (MQ=255)
aTTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGGCAATATaa > 1:940427/1‑76 (MQ=255)
aTTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCg < 2:280438/76‑1 (MQ=255)
ttGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGt < 1:841500/76‑1 (MQ=255)
ttGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGt < 1:1126799/76‑1 (MQ=255)
tGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTc < 1:136588/76‑1 (MQ=255)
tGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTc > 2:488492/1‑76 (MQ=255)
gTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCa > 2:1340517/1‑76 (MQ=255)
tCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCAt < 2:1289999/76‑1 (MQ=255)
tCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCAt < 1:1461624/76‑1 (MQ=255)
gACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATcc > 2:951599/1‑76 (MQ=255)
gACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATcc < 2:629259/76‑1 (MQ=255)
cGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCt < 2:817228/76‑1 (MQ=255)
cTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCttt < 2:959943/76‑1 (MQ=255)
cTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCttt < 2:36563/76‑1 (MQ=255)
cTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCttt < 2:959924/76‑1 (MQ=255)
cTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCttt < 2:270671/76‑1 (MQ=255)
tGGCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTa < 2:915514/76‑1 (MQ=255)
ggCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTAc > 1:1114796/1‑76 (MQ=255)
ggCGCTTCTTCCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTAc < 1:217499/76‑1 (MQ=255)
ttcttcCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGttct < 2:1470955/76‑1 (MQ=255)
cttcCGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGttcttc < 1:617449/76‑1 (MQ=255)
cGGGGCTTCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGTTCTTCACTa > 1:209255/1‑76 (MQ=255)
tCTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGTTCTTCACTAACAACtt > 2:606312/1‑76 (MQ=255)
cTGACTTCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGTTCTTCACTAACAACTTg < 2:12808/76‑1 (MQ=255)
tCGCTGCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGTTCTTCACTAACAACTTGCACcca < 2:1497962/76‑1 (MQ=255)
|
ATCACAGCTTCTTCTATAACATTGGTCATTGTCGACGCTGGCGCTTCTTCCGGGGCTTCTGACTTCGCTTCTGGTGTATACGGTAGGACAATATAAATGTTCGTCATCCCTTTACGTTCTTCACTAACAACTTGCACCCA > REL606/2140857‑2140996
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
