Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A94 F1 I1 R1	15	48.6	3202402	95.4%	3055091	75.9

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	REL606	2,032,114	A→G	R228R (CGT→CGC)	manB ←	Phosphomannomutase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	REL606	2,032,114	0	A	G	100.0%	50.8 / NA	16	R228R (CGT→CGC)	manB	Phosphomannomutase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/6); total (10/6)

AAACAGGAAACAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTACGGGTGTCGTCGCGGCATTCCGGCAGC  >  REL606/2032042‑2032141

aaaCAGGAAACAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCgg                          >  1:326680/1‑76 (MQ=255)

 aaCAGGAAACAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCggg                         <  1:824277/76‑1 (MQ=255)

    aGGAAACAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGgtgt                      >  1:1352871/1‑76 (MQ=255)

    aGGAAACAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGgtgt                      >  2:693120/1‑76 (MQ=255)

     ggAAACAGCGGTTAAAATCGCCATCAAAGGCAATGCCCATATCGGCGCCGTGTTTGATGCCCGCATGGCGGGTgtc                     >  2:1559016/1‑76 (MQ=14)

     ggAAACAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTgtc                     >  1:389644/1‑76 (MQ=255)

     ggAAACAGCGGTCAAAATCGCCATCAAAGGCAATGACCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTgtc                     >  2:1451935/1‑76 (MQ=255)

        aaCAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTgtcgtc                  >  2:848218/1‑76 (MQ=255)

           aGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTcgcg               <  2:1308469/76‑1 (MQ=255)

           aGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTcgcg               <  1:1573317/76‑1 (MQ=255)

             cGGTCAAAATCGCCATCAAAGGCAACGCCCATATCCGCGCCGTGTTCGNTGACAGAATAGCCGGCNTCGTcgcgac             >  1:1323098/1‑74 (MQ=9)

              ggTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTCGCGGCa            <  1:1562705/76‑1 (MQ=255)

               gTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTCGCGGCAt           >  1:1503397/1‑76 (MQ=25)

                  aaaaTCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTCGCGGCATTcc        >  2:1505970/1‑76 (MQ=21)

                    aaTCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTCGCGGCATTCCgg      >  2:661017/1‑76 (MQ=21)

                     aTCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATGGCGGGTGTCGTCGCGGCATTCCGgc     <  2:1416/76‑1 (MQ=255)

                       cGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTCGCGGCATTCCGgcag   >  1:915726/1‑76 (MQ=17)

                        gCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTGCGGGTGTCGTCGCGGCATTCCGgcagc  <  2:778680/76‑1 (MQ=14)

AAACAGGAAACAGCGGTCAAAATCGCCATCAAAGGCAATGCCCATATCCGCGCCGTGTTTGATGACCGCATTACGGGTGTCGTCGCGGCATTCCGGCAGC  >  REL606/2032042‑2032141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

N/A