Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A21 F999 I0 R1
|
108 |
30.5 |
2257647 |
98.2% |
2217009 |
49.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
NC_000913 |
3,720,634 |
Δ1,442 bp |
IS150‑mediated |
insJ–insK |
insJ, insK |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
NC_000913 |
3720634 |
3722075 |
1442 |
38 [0] |
[0] 34 |
insJ–insK |
insJ,insK |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
NC_000913 |
= 3720633 | 0 (0.000) | 34 (1.130) |
25/98 |
0.1 |
100% |
noncoding (1/1443 nt) |
IS150 |
repeat region |
| ? | NC_000913 |
3722076 = |
0 (0.000) | intergenic (+27/+252) |
insK/glyS |
IS150 conserved protein InsB/glycine‑‑tRNA ligase subunit beta |
GATK/CNVnator alignment
N/A
