Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I52 R1
|
239 |
220.4 |
11079197 |
93.2% |
10325811 |
100.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
4,576,712 |
T→G |
pseudogene (2794/2937 nt) |
yjiV → |
pseudogene; conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,576,712 | 0 | T | G | 97.3%
| 780.4
/ 6.8
| 222 | pseudogene (2794/2937 nt) | yjiV | pseudogene; conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (2/4); new base G (106/110); total (108/114) |
| Fisher's exact test for biased strand distribution p-value = 6.84e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.65e-01 |
Only 100 of 222 total aligned reads displayed.
TATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGC > NC_000913/4576615‑4576807
|
tatCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCa < 1:5354541/100‑1 (MQ=255)
atCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCAt < 1:3374873/100‑1 (MQ=255)
cccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCg > 1:5131565/1‑100 (MQ=255)
ccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGc > 2:3979514/1‑100 (MQ=255)
ccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGc > 1:3209146/1‑100 (MQ=255)
ccTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGc > 1:1623782/1‑100 (MQ=255)
cTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCa > 2:2951189/1‑100 (MQ=255)
tCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCaa < 2:50451/100‑1 (MQ=255)
cACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAAt > 1:2992211/1‑100 (MQ=255)
aCCAACGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTAGTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATg < 1:593621/100‑1 (MQ=255)
ccATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATgg > 2:4239177/1‑100 (MQ=255)
ccATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATgg > 2:2436684/1‑100 (MQ=255)
ccATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGCATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATgg > 2:592635/1‑100 (MQ=255)
cATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGc < 2:305868/100‑1 (MQ=255)
aTCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCa > 1:4928017/1‑100 (MQ=255)
aTCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCa < 2:625719/100‑1 (MQ=255)
tCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCAt > 1:3495862/1‑100 (MQ=255)
cGTAAAGTGACGGTGACTTTGGAGGATGGTCAGGTATTGAGGATCCGCTTCGATCAGGCGGGGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCAtt < 2:2111205/100‑1 (MQ=255)
cGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCAtt > 1:2316397/1‑100 (MQ=255)
aaCTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACtt < 1:4722082/100‑1 (MQ=255)
cTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTg < 1:2534750/100‑1 (MQ=255)
cTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTg < 1:499830/100‑1 (MQ=255)
cTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTg < 2:2332721/100‑1 (MQ=255)
tGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGa > 1:2720490/1‑100 (MQ=255)
gACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATTGCAATGGCATTACTTTGAt < 1:3788989/100‑1 (MQ=255)
cGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGAttt > 1:811128/1‑100 (MQ=255)
cGGTGACTGTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGAttt < 1:1425654/100‑1 (MQ=255)
gACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCcgc < 2:3815303/100‑1 (MQ=255)
cTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGa > 2:1827883/1‑100 (MQ=255)
cTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGa > 1:426059/1‑100 (MQ=255)
ttttGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGAt < 2:3559096/100‑1 (MQ=255)
tttGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGTATCGCAATGGCATTACTTTGATTTCCGCGATg < 2:177582/100‑1 (MQ=255)
ttGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGa < 2:1499759/100‑1 (MQ=255)
gATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGttt < 2:2246861/100‑1 (MQ=255)
aTGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttc < 1:1417679/100‑1 (MQ=255)
aTGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttc < 2:4390803/100‑1 (MQ=255)
aTGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttc < 1:5033412/100‑1 (MQ=255)
tGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttct > 1:438711/1‑100 (MQ=255)
tgTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttctt < 2:4725936/99‑1 (MQ=255)
ggTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttctt < 2:1075982/100‑1 (MQ=255)
cttatggTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttctt < 2:2888863/95‑1 (MQ=255)
gTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttcttt > 1:2817071/1‑100 (MQ=255)
gTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGtttctta > 1:4792781/1‑99 (MQ=255)
cAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGCCGTTTCTTTcc < 2:5090598/100‑1 (MQ=255)
cAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTcc < 2:162332/100‑1 (MQ=255)
cAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTcc > 2:3396469/1‑100 (MQ=255)
cAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTcc < 1:2427100/100‑1 (MQ=255)
cAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTcc < 2:689784/100‑1 (MQ=255)
ggTATTGAAGATCCGCTTCGATCAGGGTATGGGATACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAg < 2:489405/100‑1 (MQ=255)
ggTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAg < 2:2423582/100‑1 (MQ=255)
ggTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAg < 1:2217961/100‑1 (MQ=255)
gTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGt > 2:4172733/1‑100 (MQ=255)
gTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGt > 1:2579521/1‑100 (MQ=255)
gTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGt < 1:1698422/100‑1 (MQ=255)
aTTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTa > 1:5404104/1‑100 (MQ=255)
tGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCCGTTAGt > 2:525412/1‑100 (MQ=255)
gAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTACAGTTAGTc > 2:4764900/1‑100 (MQ=255)
aGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaa > 2:2688522/1‑100 (MQ=255)
gATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaa > 2:1949887/1‑100 (MQ=255)
gATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaa > 1:1185182/1‑100 (MQ=255)
gATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaa > 1:3743544/1‑100 (MQ=255)
gATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCaaa > 2:1182020/1‑100 (MQ=255)
tCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAGAAt < 1:4290050/100‑1 (MQ=255)
tCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAAt > 1:2203625/1‑100 (MQ=255)
tCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAAt < 1:5499625/100‑1 (MQ=255)
gCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGc > 1:155340/1‑100 (MQ=255)
tCGATCAGGGGATGGGCTACTGGCGCAGCAACTTCGCATCGCAAGGGCATTACGTTCAGTTCCGCGATGACGTTTCTTCCCTGGGAGTTCAAATGGCTCa < 2:1269956/100‑1 (MQ=255)
cGATCAGGGGATGGGCTACTGGCGCATGAACTTTGCATCGCAATGGCATTACTTTGATTGCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAg < 1:4822089/100‑1 (MQ=255)
cGATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAg < 2:4143575/100‑1 (MQ=255)
gATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAgg < 2:4484842/100‑1 (MQ=255)
gATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAgg < 1:3257146/100‑1 (MQ=255)
gATCAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAgg < 2:328223/100‑1 (MQ=255)
cAGGGGATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCt > 2:2994897/1‑100 (MQ=255)
aGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTg > 2:1561370/1‑100 (MQ=255)
gggATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCa > 1:3580621/1‑100 (MQ=255)
gggATGGGCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCa < 2:677462/100‑1 (MQ=255)
tGGGCTACTGGCGAATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCaagga > 1:5574640/1‑100 (MQ=255)
ggCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCaaggaag > 1:5146696/1‑100 (MQ=255)
ggCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCaaggaag > 1:641902/1‑100 (MQ=255)
ggCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCaaggaag > 1:1321224/1‑100 (MQ=255)
ggCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGAGTTCCGCGATGACGTTTCTTTCCAGTTCGTCAAAATGGCTCAGGCCGGCaaggaag < 2:3253790/100‑1 (MQ=255)
gCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCaaggaagg < 2:4847565/100‑1 (MQ=255)
gCTACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCaaggaagg < 2:1507562/100‑1 (MQ=255)
tACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGa < 1:850308/100‑1 (MQ=255)
tACTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGa > 2:5293752/1‑100 (MQ=255)
aCTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGaa > 2:1405489/1‑100 (MQ=255)
cTGGCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAAt > 2:1097777/1‑100 (MQ=255)
ggCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTATTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGt > 1:1963599/1‑100 (MQ=255)
ggCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGt < 1:5443923/100‑1 (MQ=255)
ggCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGt > 1:1660115/1‑100 (MQ=255)
ggCGCATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGt > 1:161973/1‑100 (MQ=255)
cgcATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCg > 1:4906506/1‑100 (MQ=255)
cgcAGCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCCTTCCAGTTAGGCAAAATGGCTCAGGCGTCCCAGGAAGGGAAtagcg > 2:4676860/1‑96 (MQ=255)
gcATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGc > 2:5045913/1‑100 (MQ=255)
cATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGcc < 1:915715/100‑1 (MQ=255)
cATCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGcc > 1:3964273/1‑100 (MQ=255)
aTCAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCa < 1:4349609/100‑1 (MQ=255)
cAACTTTGCATCGCAATGGCATTACTTTGATTTCCTCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGTCAAc < 2:4644332/100‑1 (MQ=255)
cAACTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAAc > 1:1043522/1‑100 (MQ=255)
aaCTTTGCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACa > 2:3473020/1‑100 (MQ=255)
|
TATCCCTCACCATCGTAAACTGACGGTGACTTTTGAGGATGGTCAGGTATTGAAGATCCGCTTCGATCAGGGGATGGGCTACTGGCGCATCAACTTTTCATCGCAATGGCATTACTTTGATTTCCGCGATGACGTTTCTTTCCAGTTAGTCAAAATGGCTCAGGCCTGCAAGGAAGGGAATGTCGCCAACAGC > NC_000913/4576615‑4576807
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
