Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F422 I51 R1
|
223 |
69.9 |
1534784 |
95.1% |
1459579 |
214.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,956,720 |
T→G |
K722T (AAA→ACA) |
ptrA ← |
protease III |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,956,720 | 0 | T | G | 95.3%
| 208.5
/ 0.4
| 64 | K722T (AAA→ACA) | ptrA | protease III |
| Reads supporting (aligned to +/- strand): ref base T (1/2); new base G (34/27); total (35/29) |
| Fisher's exact test for biased strand distribution p-value = 5.86e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
ATTGTTCTTCGGTACGCAACTGATTGTAGAACCACGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTTTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCAAACGCTTTACCCTTTTCTGCGG > NC_000913/2956496‑2956945
|
aTTGTTCTTCGGTACGCAACTGATTGTAGAACCACGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATcg < 2:563587/236‑1 (MQ=255)
cttcGGTACGCAACTGATTGTAGAACCACGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGcc > 1:164029/1‑236 (MQ=255)
cGGTACGCAACTGATTGTAGAACCACGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGcc > 2:83180/1‑233 (MQ=255)
gTACGCAACTGATTGTAGAACCACGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCgt > 1:426081/1‑236 (MQ=255)
aTTGTAGAACCACGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTggg > 2:21541/1‑236 (MQ=255)
cGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATg > 1:131781/1‑235 (MQ=255)
cGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATg > 2:763189/1‑235 (MQ=255)
gCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCCCTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCAGTCAt > 1:691218/1‑232 (MQ=255)
aCGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGa < 1:579211/235‑1 (MQ=255)
cGATCTGCCCCAACCGGAAGCTATAGGCTGAGCTGGTGTTTTCATCGTAGCCAGTCGGTACAAATTCCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATa < 1:351503/236‑1 (MQ=255)
cGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATa < 1:83180/236‑1 (MQ=255)
tCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATTGCGTTCCAGCGTTGTTGCCTGGGCCTCGGTCCTGTTTCCGATAAcc > 2:761933/1‑236 (MQ=255)
tCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTTCCGATAAcc > 2:233694/1‑236 (MQ=255)
tGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGAAACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTTCCTGGGCCTCGGTCATGTTGCCGATAATCa > 2:690465/1‑235 (MQ=255)
ccccAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATa > 1:179347/1‑235 (MQ=255)
gagagCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGt > 1:564806/1‑236 (MQ=255)
taGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCCAGcccc > 1:131859/1‑236 (MQ=255)
aGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGcccc < 2:131781/235‑1 (MQ=255)
gCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTTTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGa > 2:650007/1‑236 (MQ=255)
gCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGtt > 2:183144/1‑203 (MQ=255)
gCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGtt < 1:183144/203‑1 (MQ=255)
aGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGcccc > 2:79631/1‑229 (MQ=255)
aGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGcccc < 1:79631/229‑1 (MQ=255)
cATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGa < 1:763189/236‑1 (MQ=255)
cATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGa < 2:426081/236‑1 (MQ=255)
gTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCTCGATAgg > 2:43754/1‑236 (MQ=255)
aGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGc > 1:385707/1‑235 (MQ=255)
gCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCa < 2:564806/236‑1 (MQ=255)
aGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCa < 1:21541/236‑1 (MQ=255)
aCAGATACCGCTTCCAGTGCGGAGTCGTGACTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCAGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCttt < 2:691218/236‑1 (MQ=255)
aCAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTTTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCttt < 1:650007/236‑1 (MQ=255)
aaTACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCttt < 2:617484/233‑1 (MQ=255)
gTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAAttt > 2:563783/1‑232 (MQ=255)
tGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGc > 2:466220/1‑236 (MQ=255)
aCCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACGCAACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCAt < 2:608379/236‑1 (MQ=255)
ccGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCAtc < 1:563783/236‑1 (MQ=255)
ggCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGcccc > 2:558351/1‑162 (MQ=255)
ggCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGcccc < 1:558351/162‑1 (MQ=255)
cTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTcgc > 2:614983/1‑236 (MQ=255)
tacAAAGATGACTGATTGGTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGACCCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCgag < 2:373643/233‑1 (MQ=255)
cGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGa < 2:132669/164‑1 (MQ=255)
cGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGa > 1:132669/1‑164 (MQ=255)
cGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACt > 1:183846/1‑236 (MQ=255)
ttattaaTCGACCACTACATCGTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCgag < 2:164029/229‑1 (MQ=255)
tttATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCgaga > 1:488527/1‑233 (MQ=255)
gACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTgcg < 1:466220/236‑1 (MQ=255)
aCCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTTTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACtt < 2:27948/220‑1 (MQ=255)
aCCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTcgc < 2:280631/145‑1 (MQ=255)
aCCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTcgc > 1:280631/1‑145 (MQ=255)
aCCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGa < 1:339636/147‑1 (MQ=255)
aCCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGa > 2:339636/1‑147 (MQ=255)
aCCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACtt > 1:27948/1‑220 (MQ=255)
tttCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCAtctc > 2:100634/1‑187 (MQ=255)
tttCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCAtctc < 1:100634/187‑1 (MQ=255)
tttCGACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTg > 2:201059/1‑236 (MQ=255)
gACACCACTCTGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCa > 2:471269/1‑236 (MQ=255)
tctGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCaa > 2:398386/1‑229 (MQ=255)
tctGAACCATCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCaa < 1:398386/229‑1 (MQ=255)
tCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCAc < 2:582349/122‑1 (MQ=255)
tCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCAc > 1:582349/1‑122 (MQ=255)
tCAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCAAACGCTTTACCCTTTTc > 2:190740/1‑236 (MQ=255)
cAGCGCCCAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCAAACGCTTTACCCTTTTCt > 2:83768/1‑236 (MQ=255)
cAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCAAACGCTTTACCCTTTTCTGCgg < 1:614983/233‑1 (MQ=255)
cAACTGTGTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCAAACGCTTTACCCTTTTCTGCg < 1:535306/232‑1 (MQ=255)
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ATTGTTCTTCGGTACGCAACTGATTGTAGAACCACGGCTGTACGATCTGCCCCAACAGAGAGCTATAGGCTGAGCTGGTGTATTCATCGTAGCCAGTCGGTACAAATACCGCTGCCAGTGCGGAGTCGGTGCTGTTACCGGCTTTTTCAAAGATGACGGATTGTTTTTTATCGACCACTACATCTTTGTTTCGACACCACTCTGAACCATCAGCGCCCAACTGTTTTTGCACATCGCGTGCCAGCGTTGTTGCCTGGGCCTCGGTCATGTTGCCGATAACCATAAACTCTGGTCGAGCCCCTGATTTTAAGGCGTCGCGATAGGCCAGCACCTCTTTCAACGTAATGGAGGGCAAAATTTTACGCCGTTCATCTCGCGAGAAGTACGGCACTTGCGAGAGCATCTGCGCGGGCATAATCGCCTGCTCAAACGCTTTACCCTTTTCTGCGG > NC_000913/2956496‑2956945
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
