Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I51 R1 223 69.9 1534784 95.1% 1459579 214.4

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,488,471 A→C N561H (AAC→CAC)  yhfK → putative transporter, FUSC superfamily inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,488,4710AC95.6% 133.8 / ‑1.7 45N561H (AAC→CAC) yhfKputative transporter, FUSC superfamily inner membrane protein
Reads supporting (aligned to +/- strand):  ref base A (1/1);  new base C (19/24);  total (20/25)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.09e-01

GCAATACATCCTTCCGCGTCTTATCGATACCATTATTGGTTGTTTAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATAACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGT  >  NC_000913/3488242‑3488698
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                   
gCAATACATCCTGCCGCGTCTTATCGATACCATTATTGGTTGTTTAATGGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCa                                                                                                                                                                                                                                <  1:259733/235‑1 (MQ=255)
       aTCCTTCCGCGTCTTATCGATACCATTATTGGTTGTTTAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATAACTCATTGAATCa                                                                                                                                                                                                                        >  2:164096/1‑236 (MQ=255)
             ccGCGTCTTATCGATACCATTATTGGTTGTTTAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAgg                                                                                                                                                                                                                      <  1:723900/232‑1 (MQ=255)
                            aCCATTATTGGTTGTTTAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGAACCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTGAATCAGGCACATAACACTCTGTACCACTCATTGAATCAGGCGATGCAGGAACCGACGt                                                                                                                                                                                                    >  2:520294/1‑235 (MQ=255)
                                     ggTTGTTTAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCa                                                                                                                                                                                          <  1:82504/236‑1 (MQ=255)
                                          tttAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAAAACCCTGTATCACTCATTGAATCAGGCGAGGCAGGAACCGCCGTTTTACAGCCATTATc                                                                                                                                                                                     >  2:753588/1‑236 (MQ=255)
                                          tttAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGAACCGCAACCTACGCCCCTGGCCTTGGAGCGAATGCGGGGCAATCAGGGACATAACACTCTGgata                                                                                                                                                                                                                                     >  2:580106/1‑188 (MQ=255)
                                            tAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGc                                                                                                                                                                                                                     >  1:696518/1‑202 (MQ=255)
                                            tAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGc                                                                                                                                                                                                                     <  2:696518/202‑1 (MQ=255)
                                              aTTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGc                                                                                                                                                                                 <  1:142452/236‑1 (MQ=255)
                                                             aCTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCg                                                                                                                                                                                                                    >  1:109137/1‑186 (MQ=255)
                                                             aCTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCg                                                                                                                                                                                                                    <  2:109137/186‑1 (MQ=255)
                                                                     gCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGt                                                                                                                                                               <  1:236744/231‑1 (MQ=255)
                                                                       tgtgGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATGCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGcac                                                                                                                                                        <  1:252925/236‑1 (MQ=255)
                                                                          ggCCGCAGTGGCAGAGCGGTTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGc                                                                                                                                                     <  1:753588/236‑1 (MQ=255)
                                                                          ggCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATAACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGc                                                                                                                                                     <  1:164096/236‑1 (MQ=255)
                                                                           gCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGcc                                                                                                                                                    >  1:78165/1‑236 (MQ=255)
                                                                                aGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGTGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGGTTAACAGCCATTATATGGCAGATATGAAACTGTGGGTAACGGACAGCCa                                                                                                                                                   >  2:387065/1‑232 (MQ=255)
                                                                                 gTGGCAGAGCGGGTTAATGCGTAAAAGCGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGAACCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTa                                                                                                                                              <  1:196095/236‑1 (MQ=255)
                                                                                         acggtatagtGCGTAAACACCCCCTTGATGCTTACAAAGCCATTACGGAATGGATTCCGTTGAGTCTGAGCGGGGATCCGCAACCTACGCCACTGGCCTGGCATCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAg                                                                                                                                      <  2:259727/227‑1 (MQ=255)
                                                                                            ggTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCat                                                                                                                                   >  1:80274/1‑236 (MQ=255)
                                                                                                                         ttAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTAttgtt                                                                                                                                         >  1:125452/1‑201 (MQ=255)
                                                                                                                         ttAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTAttgtt                                                                                                                                         <  2:125452/201‑1 (MQ=255)
                                                                                                                                 cTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGata                                                                                                                                                                            <  1:314009/158‑1 (MQ=255)
                                                                                                                                 cTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGata                                                                                                                                                                            >  2:314009/1‑158 (MQ=255)
                                                                                                                                    tCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGc                                                                                             <  1:387065/234‑1 (MQ=255)
                                                                                                                                           gCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCAcc                                                                                    >  1:72685/1‑236 (MQ=255)
                                                                                                                                                tCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTAttg                                                                                                                                           >  1:721022/1‑176 (MQ=255)
                                                                                                                                                tCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTAttg                                                                                                                                           <  2:721022/176‑1 (MQ=255)
                                                                                                                                                tCGCTTGATTCTTAGCGAGGACCCGCAACCTACGCGACTGGCCTGGCAGCGAATGCGGGTAAATCAGTCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAAc                                                                               <  2:685437/236‑1 (MQ=255)
                                                                                                                                                       aTTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGcaca                                                                        <  1:461390/236‑1 (MQ=255)
                                                                                                                                                       aTTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGcaca                                                                        <  1:410696/236‑1 (MQ=255)
                                                                                                                                                                 aGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACAACGCTGGCGCGGGAAAACCGGGCATTGCACCCTGAACTGGCGCACTAGTAtttc                                                              >  2:694815/1‑235 (MQ=255)
                                                                                                                                                                               aCGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAAAACCGGGCATTGCCACCTGAACTGGCCCACAAGAATTTACAGCCTTGTGaaa                                                 >  2:81842/1‑235 (MQ=255)
                                                                                                                                                                                      tggcctggcAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGACACCTGAACTGGCACAAGAGAATTTACAGTCTTGTGAAATCGCAAtt                                         >  1:584553/1‑236 (MQ=255)
                                                                                                                                                                                                  gAATGCGGGTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTca                              >  1:398355/1‑235 (MQ=255)
                                                                                                                                                                                                         gatAACTCAGGCACATAACACTCTTAATCCATAGTTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGAc                      <  2:581344/234‑1 (MQ=255)
                                                                                                                                                                                                          gTAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGa                       <  2:78165/234‑1 (MQ=255)
                                                                                                                                                                                                           tAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAAc                                                                               >  2:531090/1‑177 (MQ=255)
                                                                                                                                                                                                           tAAATCAGGCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAAc                                                                               <  1:531090/177‑1 (MQ=255)
                                                                                                                                                                                                              ctCAGGCACTTAACTCTCTGTATCACTAATGGAATCAGGCGTGGCAGGACCCGGCGTTTATCAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGTGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCTTTGTCAGCAGCGACTGGa                  <  2:584553/234‑1 (MQ=255)
                                                                                                                                                                                                                  ggCACATAACACTCTGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTTACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATg             >  2:692076/1‑236 (MQ=255)
                                                                                                                                                                                                                            acTCTGTATCAAGCATTGATTCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCggg   <  1:717330/236‑1 (MQ=255)
                                                                                                                                                                                                                              tctGTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGt  >  1:756136/1‑235 (MQ=255)
                                                                                                                                                                                                                                 gTATCACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCATCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGt  >  1:534787/1‑232 (MQ=255)
                                                                                                                                                                                                                                 gTATCACTCATTGAATCAGGCGATGCAGCAACCGGCTTTTAACAGCCATTATCTGGCAGATATGAAACTGTTGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTTCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTg                                 <  1:692441/201‑1 (MQ=255)
                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                   
GCAATACATCCTTCCGCGTCTTATCGATACCATTATTGGTTGTTTAATTGCTTTCGGCGGTACTGTCTGGCTGTGGCCGCAGTGGCAGAGCGGGTTATTGCGTAAAAACGCCCATGATGCTTTAGAAGCCTATCAGGAAGCGATTCGCTTGATTCTTAGCGAGGATCCGCAACCTACGCCACTGGCCTGGCAGCGAATGCGGGTAAATCAGGCACATAACACTCTGTATAACTCATTGAATCAGGCGATGCAGGAACCGGCGTTTAACAGCCATTATCTGGCAGATATGAAACTGTGGGTAACGCACAGCCAGTTTATTGTTGAGCATATTAATGCCATGACCACGCTGGCGCGGGAACACCGGGCATTGCCACCTGAACTGGCACAAGAGTATTTACAGTCTTGTGAAATCGCCATTCAGCGTTGTCAGCAGCGACTGGAGTATGACGAACCGGGT  >  NC_000913/3488242‑3488698

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A