Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F422 I51 R1	223	69.9	1534784	95.1%	1459579	214.4

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,633,028	T→G	pseudogene (238/414 nt)	yhiL ←	pseudogene, DUF4049 family protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,633,028	0	T	G	100.0%	166.5 / NA	44	pseudogene (238/414 nt)	yhiL	pseudogene, DUF4049 family protein
Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (20/24); total (20/24)

AAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCCTCAGGATCAGTAGGATTTTTCATCTGATTAAATGGAACCTGCAAAGCACCGAGACAATAACA  >  NC_000913/3632806‑3633262

aaaTACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTAAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCca                                                                                                                                                                                                                               <  2:316085/236‑1 (MQ=255)

                              ccGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTg                                                                                                                                                                                                         <  1:94400/228‑1 (MQ=255)

                              ccGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTg                                                                                                                                                                                                         <  1:608811/228‑1 (MQ=255)

                              ccGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCt                                                                                                                                                                                                       <  1:706414/230‑1 (MQ=255)

                                     cATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCCCGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCag                                                                                                                                                                                          <  2:115360/236‑1 (MQ=255)

                                     cATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCag                                                                                                                                                                                          <  1:424427/236‑1 (MQ=255)

                                                aaTGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCt                                                                                                                                                                                                  <  1:359456/217‑1 (MQ=255)

                                                aaTGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCt                                                                                                                                                                                                  >  2:359456/1‑217 (MQ=255)

                                                      gTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAaataa                                                                                                                                                                         >  2:92182/1‑236 (MQ=255)

                                                      gTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAaataa                                                                                                                                                                         <  1:363798/236‑1 (MQ=255)

                                                      gTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAaataa                                                                                                                                                                         >  1:642812/1‑236 (MQ=255)

                                                      gTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAaataa                                                                                                                                                                         >  1:528544/1‑236 (MQ=255)

                                                         gAAACCAACTTAGCCCTGAGGAATAAATTATTTTATTATTTTTAACCCGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTa                                                                                                                                                                      <  2:285993/236‑1 (MQ=255)

                                                                 cTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGCTGGAAATCAGTAGAGTTATCAAATTAATTTGCATCTAc                                                                                                                                                              >  2:171790/1‑236 (MQ=255)

                                                                          gAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGtgtg                                                                                                                                                       <  1:542796/234‑1 (MQ=255)

                                                                             gAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGttt                                                                                                                                                  <  1:413079/236‑1 (MQ=255)

                                                                                tAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCaa                                                                                                                                               >  2:646714/1‑236 (MQ=255)

                                                                                tAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCaa                                                                                                                                               >  1:77518/1‑236 (MQ=255)

                                                                                    ttattttattattttTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTa                                                                                                                                           <  1:646714/236‑1 (MQ=255)

                                                                                                            cttccttcAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATaga                                                                                                                   >  1:360433/1‑236 (MQ=255)

                                                                                                             ttccttcAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATagag                                                                                                                  <  2:642812/236‑1 (MQ=255)

                                                                                                              tccttcAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAgg                                                                                                                 <  1:25391/236‑1 (MQ=255)

                                                                                                                cttcAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGa                                                                                                                <  1:166238/235‑1 (MQ=255)

                                                                                                                   cAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCt                                                                                                                                      <  1:669568/210‑1 (MQ=255)

                                                                                                                   cAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCt                                                                                                                                      >  2:669568/1‑210 (MQ=255)

                                                                                                                          tttAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAAt                                                                                                                                                                                             >  1:185736/1‑148 (MQ=255)

                                                                                                                          tttAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAAt                                                                                                                                                                                             <  2:185736/148‑1 (MQ=255)

                                                                                                                                  cATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTccc                                                                                                                                                                                                                                 <  2:242677/104‑1 (MQ=255)

                                                                                                                                  cATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTccc                                                                                                                                                                                                                                 >  1:242677/1‑104 (MQ=255)

                                                                                                                                            ttATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCAtg                                                                                                       >  2:437876/1‑216 (MQ=255)

                                                                                                                                            ttATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCAtg                                                                                                       <  1:437876/216‑1 (MQ=255)

                                                                                                                                            ttATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTttatt                                                                                   >  2:351359/1‑236 (MQ=255)

                                                                                                                                                   aTTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGAtt                                                                                                                               >  2:239609/1‑185 (MQ=255)

                                                                                                                                                   aTTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGAtt                                                                                                                               <  1:239609/185‑1 (MQ=255)

                                                                                                                                                       ttgATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTg                                                                                                                                                                                                         <  2:68564/107‑1 (MQ=255)

                                                                                                                                                       ttgATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTg                                                                                                                                                                                                         >  1:68564/1‑107 (MQ=255)

                                                                                                                                                         gATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCt                                                                      >  2:621972/1‑236 (MQ=255)

                                                                                                                                                            tATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAAt                                                                   <  1:92182/236‑1 (MQ=255)

                                                                                                                                                                          ggCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCaaa                                                                                                                                                                             >  1:677578/1‑116 (MQ=255)

                                                                                                                                                                          ggCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCaaa                                                                                                                                                                             <  2:677578/116‑1 (MQ=255)

                                                                                                                                                                          ggCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAACATTGGCTAATTCCTCAGGATCAGt                                                     >  2:353399/1‑236 (MQ=255)

                                                                                                                                                                           gCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCCTCAGGATCAGTa                                                    >  1:21975/1‑236 (MQ=255)

                                                                                                                                                                            cccATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCCTCAGGATCAGTAg                                                   <  2:21975/236‑1 (MQ=255)

                                                                                                                                                                                                                ggggTCTTCACCTTGGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCCTCAGGATCAGTAGGATTTTTCATCTGATTAAATGGAACCTGCAAAGCAc               >  2:681811/1‑236 (MQ=255)

                                                                                                                                                                                                                             ttGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCCTCAGGATCAGTAGGATTTTTCATCTGATTAAATGGAACCTGCAAAGCACCGAGACAATAACa  >  2:175072/1‑236 (MQ=255)

AAATACTGGCAGGATTAAAAAGACATACCACCGTATTCATGGAGTTTTAATGTAGTTGAAAACAACTAAGCCCTGAGGAATAAATTATTTTATTATTTTTATCACGTGCTTCCTTCAGGGAATTTAGCCCCATAATACCATTATCAAATTGTTGATTATGATCTACCCCGGGCCCATGATGCCCATATTTTTGTCTAATGTATTTGCTGGGGTCTTCACCTTTGAGTGTCTCCCCACATATGAAGATACGTTCACGTGCTGGTCTGAAATCAGTAGTGTTATCAAAATAATTAGCATATACAGGTGTGGGTTTCAAAGTATTGCTTCGGATTAGATGGAATAGAGGATCATCCATGTGTTCTTTATGTTTTTTATTAAAAATATTGGCTAATTCCTCAGGATCAGTAGGATTTTTCATCTGATTAAATGGAACCTGCAAAGCACCGAGACAATAACA  >  NC_000913/3632806‑3633262

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A