Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A7 F422 I53 R1 229 158.0 8090706 91.1% 7370633 100.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,899,375 A→C I15S (ATT→AGT)  ygcU ← putative FAD‑linked oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,899,3750AC97.9% 650.8 / ‑1.9 188I15S (ATT→AGT) ygcUputative FAD‑linked oxidoreductase
Reads supporting (aligned to +/- strand):  ref base A (2/2);  new base C (82/102);  total (84/104)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 193 total aligned reads displayed.

AGTATAAATGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACAATTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGAAAACAG  >  NC_000913/2899278‑2899471
                                                                                                 |                                                                                                
aGTATAAATGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACtt                                                                                                >  1:4076127/1‑100 (MQ=255)
  tataAATGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTc                                                                                              >  1:3635741/1‑100 (MQ=255)
   ataAATGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTcc                                                                                             <  1:3421011/100‑1 (MQ=255)
   ataAATGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTcc                                                                                             >  1:1735626/1‑100 (MQ=255)
   ataAATGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGGAATTACGCGATCTGCACCAACACTTTcc                                                                                             <  2:913344/100‑1 (MQ=255)
       aTGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTa                                                                                         <  1:2542721/100‑1 (MQ=255)
       aTGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTa                                                                                         >  1:2363328/1‑100 (MQ=255)
        tGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTTTTTTATTTTATTTTACGGGTAACTACGCGATCTACACCAACACTTTCCTTTAg                                                                                        <  2:1490406/100‑1 (MQ=255)
          ncATGAATATCCGGAAATTTACGAAAACGGGCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCt                                                                                      >  2:3891302/2‑100 (MQ=255)
          gcATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCt                                                                                      <  1:2607776/99‑1 (MQ=255)
           cATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTg                                                                                     >  2:3132263/1‑100 (MQ=255)
           cATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTg                                                                                     <  2:1658289/100‑1 (MQ=255)
            aTGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTgg                                                                                    >  1:3850404/1‑100 (MQ=255)
            aTGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTgg                                                                                    >  1:2677871/1‑100 (MQ=255)
            aTGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATCACGCGATCTGCACCAACACTTTCCTTTATCTgg                                                                                    >  1:4039723/1‑100 (MQ=255)
              gAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTc                                                                                  >  1:2060322/1‑100 (MQ=255)
               aaTATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCg                                                                                 <  1:944973/100‑1 (MQ=255)
               aaTACCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCg                                                                                 <  1:3659728/100‑1 (MQ=255)
                 tatCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGAc                                                                               <  2:1128906/100‑1 (MQ=255)
                 tatCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGAc                                                                               <  2:1986919/100‑1 (MQ=255)
                 tatCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGAc                                                                               <  2:126226/100‑1 (MQ=255)
                  atCCGGAAATTTACGAAAACGGTCAAGACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACa                                                                              <  1:109564/100‑1 (MQ=255)
                    ccGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAAt                                                                            >  1:3349600/1‑100 (MQ=255)
                     cGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATc                                                                           >  1:991258/1‑100 (MQ=255)
                     cGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATc                                                                           <  1:115740/100‑1 (MQ=255)
                     cGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATc                                                                           >  2:2807806/1‑100 (MQ=255)
                      ggAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCg                                                                          <  1:1953725/100‑1 (MQ=255)
                       gAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGc                                                                         >  2:2229537/1‑100 (MQ=255)
                       gAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGc                                                                         <  2:3733587/100‑1 (MQ=255)
                           tttACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTgcg                                                                     <  1:2899217/100‑1 (MQ=255)
                             tACGAAAACGGTGAATACTGTTTTTTTTTGATACTGTGTCATCGGGAATTACGAGGTTTGCACTAATACTTTCCTTTGGCTGGTCGACAATCGCTGcgcg                                                                   <  2:3753491/100‑1 (MQ=255)
                             tACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGcgcg                                                                   <  2:2919339/100‑1 (MQ=255)
                              aCGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCCTCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCga                                                                  >  1:2758247/1‑100 (MQ=255)
                              aCGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCga                                                                  <  2:499760/100‑1 (MQ=255)
                               cGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCgag                                                                 <  1:2136476/100‑1 (MQ=255)
                                 aaaaCGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGAt                                                               <  1:870634/100‑1 (MQ=255)
                                 aaaaCGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGAt                                                               <  2:1546999/100‑1 (MQ=255)
                                 aaaaCGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGAt                                                               >  2:2594493/1‑100 (MQ=255)
                                    aCGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATaaa                                                            >  1:3217387/1‑100 (MQ=255)
                                      ggTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGa                                                          <  2:774711/100‑1 (MQ=255)
                                      ggTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGa                                                          >  1:2875804/1‑100 (MQ=255)
                                      ggTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGa                                                          <  1:1877569/100‑1 (MQ=255)
                                       gTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGAc                                                         >  2:2568552/1‑100 (MQ=255)
                                       gTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGAc                                                         <  1:374629/100‑1 (MQ=255)
                                          aaTACTGTTTTTCTTTAATACTGTTTCATCGGTACTTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATa                                                      <  2:180887/100‑1 (MQ=255)
                                           aTACTGTTTTTCTTTAATACTGTTTCACCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAg                                                     <  2:1105721/100‑1 (MQ=255)
                                              cTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTaa                                                  <  2:1368163/100‑1 (MQ=255)
                                              cTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTaa                                                  >  1:1726108/1‑100 (MQ=255)
                                              cTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTaa                                                  >  1:631657/1‑100 (MQ=255)
                                              cTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTaa                                                  >  1:3631008/1‑100 (MQ=255)
                                                gTTTTTTTTTTTTATTTTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAATTACATATTAAtt                                                >  2:428513/1‑100 (MQ=255)
                                                gTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAAtt                                                <  1:2227670/100‑1 (MQ=255)
                                                 tttttCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAAttc                                               <  1:1636684/100‑1 (MQ=255)
                                                  ttttCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAAttcc                                              <  1:3050800/100‑1 (MQ=255)
                                                   tttCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAAttcct                                             <  1:2335748/100‑1 (MQ=255)
                                                      ntttAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAAttccttcc                                          >  1:702332/2‑100 (MQ=255)
                                                      cTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAAttccttcc                                          <  1:2198875/100‑1 (MQ=255)
                                                       tttAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATtccttcct                                         <  1:2026482/100‑1 (MQ=255)
                                                       tttAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATtccttcct                                         <  2:162849/100‑1 (MQ=255)
                                                       tttAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATtccttcct                                         <  1:3492793/100‑1 (MQ=255)
                                                        ttAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAAttcctagatc                                        >  2:2837497/1‑95 (MQ=255)
                                                        ttAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTg                                        <  2:2743002/100‑1 (MQ=255)
                                                         tAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGa                                       <  2:2111382/100‑1 (MQ=255)
                                                          aaTACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGat                                      >  1:2493612/1‑100 (MQ=255)
                                                          aaTACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGat                                      >  2:236688/1‑100 (MQ=255)
                                                           aTACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGata                                     <  2:1762447/100‑1 (MQ=255)
                                                            tACTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGataa                                    <  2:1525328/100‑1 (MQ=255)
                                                             aCTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGataat                                   >  1:3892858/1‑100 (MQ=255)
                                                             aCTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGataat                                   <  1:436744/100‑1 (MQ=255)
                                                              cTGTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGataata                                  >  2:3192714/1‑100 (MQ=255)
                                                                gTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAACGACATGGTAATTCCTTCCTGATAATaaa                                >  1:3710760/1‑100 (MQ=255)
                                                                gTTTCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATaaa                                <  2:1436477/100‑1 (MQ=255)
                                                                   tCATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAAt                             <  2:448303/100‑1 (MQ=255)
                                                                    cATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATg                            <  2:2522011/100‑1 (MQ=255)
                                                                    cATCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATg                            <  1:1925934/100‑1 (MQ=255)
                                                                     aTCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATgg                           <  1:1137900/100‑1 (MQ=255)
                                                                     aTCGGTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATgg                           >  1:3948425/1‑100 (MQ=255)
                                                                        ggTAATTACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGaat                        <  2:3451842/100‑1 (MQ=255)
                                                                             ttACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCa                   <  2:228440/100‑1 (MQ=255)
                                                                             ttACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCa                   <  1:3949881/100‑1 (MQ=255)
                                                                              tACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCAt                  >  1:2092410/1‑100 (MQ=255)
                                                                              tACGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCAt                  >  1:1355926/1‑100 (MQ=255)
                                                                               aCGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCAtt                 <  1:1001787/100‑1 (MQ=255)
                                                                               aCGCGATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCAtt                 >  1:1461436/1‑100 (MQ=255)
                                                                               aCGCGATCTGCACCAACACTTTCCTGTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATCGAATAATCAtt                 >  2:3193615/1‑100 (MQ=255)
                                                                                 gcgATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATtaa               >  2:3070108/1‑100 (MQ=255)
                                                                                 gcgATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATtaa               >  2:814070/1‑100 (MQ=255)
                                                                                  cgATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATtaat              >  2:2259782/1‑100 (MQ=255)
                                                                                   gATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATtaata             <  2:2766471/100‑1 (MQ=255)
                                                                                   gATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATtaata             >  2:3233236/1‑100 (MQ=255)
                                                                                   gATCTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATtaata             >  1:1275418/1‑100 (MQ=255)
                                                                                      cTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAaga          <  2:3235884/100‑1 (MQ=255)
                                                                                      cTGCACCAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAaga          <  2:3811415/100‑1 (MQ=255)
                                                                                           ccAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGaaaa     >  1:2464615/1‑100 (MQ=255)
                                                                                           ccAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGaaaa     >  2:2325184/1‑100 (MQ=255)
                                                                                           ccAACACTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGaaaa     >  2:2325756/1‑100 (MQ=255)
                                                                                            caacacTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGAAAAc    <  1:4006893/100‑1 (MQ=255)
                                                                                             aacacTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGAAAACa   <  2:2970079/100‑1 (MQ=255)
                                                                                             aacacTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTACTACAAAATAATAAAAATGGAATAATCATTAATAAGAGAAAACa   <  2:1859899/100‑1 (MQ=255)
                                                                                              acacTTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGAAAACAg  <  1:3119818/100‑1 (MQ=255)
                                                                                                 |                                                                                                
AGTATAAATGCCATGAATATCCGGAAATTTACGAAAACGGTCAATACTGTTTTTCTTTAATACTGTTTCATCGGTAATTACGCGATCTGCACCAACAATTTCCTTTAGCTGGTCGACAATCGCTGCGCGAGATAAAGACATAGTAATTCCTTCCTGATAATAAAAATGGAATAATCATTAATAAGAGAAAACAG  >  NC_000913/2899278‑2899471

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A